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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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how to set temporary home directory #650

Open ahmedabbas811 opened 1 week ago

ahmedabbas811 commented 1 week ago

Hello,

I am trying to run HiC-Pro on a cluster (slurm environment)

I type: HiC-Pro -i ./H3K27ac_rep2 -o ./Out_dir -c ./config.txt

It gives the following error:

Starting HiC-Pro 3.1.0 via Singularity
No temporary home directory set. Using /home2 for your home directory.
Error - Hi-C config file '/home2/s206442/config.txt' not found

How to change the temporary home directory to the current directory?

Thanks

nservant commented 5 days ago

I do not think that this message is sent by HiCPro itself ... I think this is more related to singularity and its configuration. I would advice to explore the singularity options ...