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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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About Arima Hi-C Kit restiction. #654

Open GleeenSIBS opened 2 weeks ago

GleeenSIBS commented 2 weeks ago

Great tool for Hi-C data processing!

My HiC-Pro version is 3.1.0, I am using the Arima Hi-C kit for enzyme digestion.

When I use digest_genome.py, the parameter -r can be ^GATC and G^ANTC ?

And LIGATION_SITE in configure,txt can be GATCGATC,GANTGATC,GANTANTC,GATCANTC ?

Thanks!