search

nsheff / LOLA

Locus Overlap Analysis: Enrichment of Genomic Ranges
http://code.databio.org/LOLA
72 stars 19 forks source link

hg38 database #24

Closed sb5169 closed 7 years ago

sb5169 commented 7 years ago

Hi, I think I read somewhere that hg38 is available but when I download your package and run dbPath = system.file("extdata", "hg38", package="LOLA") gives me an empty variable when I checked the extdata directory its also not there. Can you add it to your package?

nsheff commented 7 years ago

Hit, The real databases are too large to be included as external data files within the package. you have to download them separately. all genome builds are included in the same database files. please see the documentation:

http://code.databio.org/LOLA/ http://databio.org/regiondb http://cloud.databio.org/regiondb/