nsheff / LOLA

Locus Overlap Analysis: Enrichment of Genomic Ranges
http://code.databio.org/LOLA
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P4 tool not grouping according to the paper!! #43

Open 09Raghu09 opened 2 years ago

09Raghu09 commented 2 years ago

Hi Nathan,

I would like to highlight that in your paper named "Nonstationary Evolution and Compositional Heterogeneity in Beetle Mitochondrial Phylogenomics" you had plotted p4 results saying it groups according to the AT%. When I tried to run p4 with the dataset which you had included in the supplementary, It didn't group and the result obtained was different when I plotted for the same. It would be really helpful if you can give me a clarification. Maybe I missed something unlike you while p4 run. Could you please give a look and respond.