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ntm / grexome-TIMC-Primary

exome pipeline from TIMC - primary analyses (FASTQs to GVCF)
GNU General Public License v3.0
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incorporate / test octopus variant caller #2

Closed ntm closed 3 years ago

ntm commented 3 years ago

incorporate / test octopus variant caller: https://www-nature-com.insis.bib.cnrs.fr/articles/s41587-021-00861-3 https://github.com/luntergroup/octopus

ntm commented 3 years ago

octopus doesn't seem to produce GVCFs! -> no-go