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grexome-TIMC-Secondary
exome pipeline from TIMC - secondary analyses (GVCF to analysis-ready TSVs)
GNU General Public License v3.0
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command line for 0_coverage.pl
#7
Chris-lang478
closed
2 years ago
2
How to edit &subCohorts() in config.pm? W grexome-TIMC-secondary.pl: sub-cohort file defined in &subCohorts() but this file doesn't exist. Skipping this sub-cohort
#6
Chris-lang478
closed
2 years ago
2
Final result file folders Empty ----E 8_extractTranscripts.pl: couldn't find one of HV/HET/OCHV/OCHET for OM
#5
Chris-lang478
closed
2 years ago
2
debug mode on, step3 failed: 256 at sec_.pl line 283.
#4
Chris-lang478
closed
2 years ago
5
generate updated list of canonical transcripts
#3
Chris-lang478
closed
2 years ago
2
dbNSFP VEP plugin error "transcript_match parameter specified but..." -> due to corrupt dbNSFP4.3a.zip
#2
Chris-lang478
closed
2 years ago
3
use CADD v1.6 (AKA CADD-Splice) for upgrading splice variants
#1
ntm
closed
2 years ago
1