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ntucllab / libact

Pool-based active learning in Python
http://libact.readthedocs.org/
BSD 2-Clause "Simplified" License
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Errors installing libact in Windows with Anaconda #179

Closed leebanmorgan closed 4 years ago

leebanmorgan commented 4 years ago

I'm using Anaconda and pip install. I have installed the windows C++ thing and Lapacke, and have found the lapacke.h file in my computer! But for some reason when installing it fails and says it couldn't fine the lapacke.h file! I've spent my entire day trying to figure this out.

I would be fine with not using the functions that need lapacke, but I visited this page: https://github.com/ntucllab/libact/#installation-options and I cant figure out how to set those variables to zero. When I do it in anaconda prompt I get an error message. Please help, I need to get something done with this package by tmrw night

See the attached error message

ERROR: Command errored out with exit status 1: command: 'C:\Users\21mor\Anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"'; file='"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\21mor\AppData\Local\Temp\pip-wheel-oasf6hyg' cwd: C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\ Complete output (68 lines): Platform Detection: Linux. Link to liblapacke... Build VarianceReduction... Build HintSVM... running bdist_wheel running build running build_py creating build creating build\lib.win-amd64-3.7 creating build\lib.win-amd64-3.7\libact copying libact__init.py -> build\lib.win-amd64-3.7\libact creating build\lib.win-amd64-3.7\libact\base copying libact\base\dataset.py -> build\lib.win-amd64-3.7\libact\base copying libact\base\interfaces.py -> build\lib.win-amd64-3.7\libact\base copying libact\base__init.py -> build\lib.win-amd64-3.7\libact\base creating build\lib.win-amd64-3.7\libact\models copying libact\models\logistic_regression.py -> build\lib.win-amd64-3.7\libact\models copying libact\models\perceptron.py -> build\lib.win-amd64-3.7\libact\models copying libact\models\sklearn_adapter.py -> build\lib.win-amd64-3.7\libact\models copying libact\models\svm.py -> build\lib.win-amd64-3.7\libact\models copying libact\models__init.py -> build\lib.win-amd64-3.7\libact\models creating build\lib.win-amd64-3.7\libact\models\multilabel copying libact\models\multilabel\binary_relevance.py -> build\lib.win-amd64-3.7\libact\models\multilabel copying libact\models\multilabel\dummy_clf.py -> build\lib.win-amd64-3.7\libact\models\multilabel copying libact\models\multilabel__init.py -> build\lib.win-amd64-3.7\libact\models\multilabel creating build\lib.win-amd64-3.7\libact\labelers copying libact\labelers\ideal_labeler.py -> build\lib.win-amd64-3.7\libact\labelers copying libact\labelers\interactive_labeler.py -> build\lib.win-amd64-3.7\libact\labelers copying libact\labelers\init__.py -> build\lib.win-amd64-3.7\libact\labelers creating build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\active_learning_by_learning.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\density_weighted_meta.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\density_weighted_uncertainty_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\hintsvm.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\query_by_committee.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\quire.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\random_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\uncertainty_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\variance_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\init__.py -> build\lib.win-amd64-3.7\libact\query_strategies creating build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\adaptive_active_learning.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\binary_minimization.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\cost_sensitive_reference_pair_encoding.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\maximum_margin_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\multilabel_with_auxiliary_learner.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\init.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel creating build\lib.win-amd64-3.7\libact\query_strategies\multiclass copying libact\query_strategies\multiclass\active_learning_with_cost_embedding.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass copying libact\query_strategies\multiclass\expected_error_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass copying libact\query_strategies\multiclass\hierarchical_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass copying libact\query_strategies\multiclass\mdsp.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass copying libact\query_strategies\multiclass\init__.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass creating build\lib.win-amd64-3.7\libact\utils copying libact\utils\init__.py -> build\lib.win-amd64-3.7\libact\utils running build_ext No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils building 'libact.query_strategies._variance_reduction' extension creating build\temp.win-amd64-3.7 creating build\temp.win-amd64-3.7\Release creating build\temp.win-amd64-3.7\Release\libact creating build\temp.win-amd64-3.7\Release\libact\query_strategies creating build\temp.win-amd64-3.7\Release\libact\query_strategies\src creating build\temp.win-amd64-3.7\Release\libact\query_strategies\src\variance_reduction C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Users\21mor\Anaconda3\lib\site-packages\numpy\core\include -I/usr/include/ -IC:\Users\21mor\Anaconda3\include -IC:\Users\21mor\Anaconda3\include -IC:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\include -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\ucrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\shared -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\um -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\winrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\cppwinrt /Tclibact/query_strategies/src/variance_reduction/variance_reduction.c /Fobuild\temp.win-amd64-3.7\Release\libact/query_strategies/src/variance_reduction/variance_reduction.obj -std=c11 cl : Command line warning D9002 : ignoring unknown option '-std=c11' variance_reduction.c libact/query_strategies/src/variance_reduction/variance_reduction.c(5): fatal error C1083: Cannot open include file: 'lapacke.h': No such file or directory error: Command "C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Users\21mor\Anaconda3\lib\site-packages\numpy\core\include -I/usr/include/ -IC:\Users\21mor\Anaconda3\include -IC:\Users\21mor\Anaconda3\include -IC:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\include -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\ucrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\shared -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\um -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\winrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\cppwinrt /Tclibact/query_strategies/src/variance_reduction/variance_reduction.c /Fobuild\temp.win-amd64-3.7\Release\libact/query_strategies/src/variance_reduction/variance_reduction.obj -std=c11" failed with exit status 2

ERROR: Failed building wheel for libact Running setup.py clean for libact Failed to build libact Installing collected packages: libact Running setup.py install for libact ... error ERROR: Command errored out with exit status 1: command: 'C:\Users\21mor\Anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"'; file='"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record 'C:\Users\21mor\AppData\Local\Temp\pip-record-67f50wqt\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\Users\21mor\Anaconda3\Include\libact' cwd: C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\ Complete output (68 lines): Platform Detection: Linux. Link to liblapacke... Build VarianceReduction... Build HintSVM... running install running build running build_py creating build creating build\lib.win-amd64-3.7 creating build\lib.win-amd64-3.7\libact copying libact__init.py -> build\lib.win-amd64-3.7\libact creating build\lib.win-amd64-3.7\libact\base copying libact\base\dataset.py -> build\lib.win-amd64-3.7\libact\base copying libact\base\interfaces.py -> build\lib.win-amd64-3.7\libact\base copying libact\base__init.py -> build\lib.win-amd64-3.7\libact\base creating build\lib.win-amd64-3.7\libact\models copying libact\models\logistic_regression.py -> build\lib.win-amd64-3.7\libact\models copying libact\models\perceptron.py -> build\lib.win-amd64-3.7\libact\models copying libact\models\sklearn_adapter.py -> build\lib.win-amd64-3.7\libact\models copying libact\models\svm.py -> build\lib.win-amd64-3.7\libact\models copying libact\models__init.py -> build\lib.win-amd64-3.7\libact\models creating build\lib.win-amd64-3.7\libact\models\multilabel copying libact\models\multilabel\binary_relevance.py -> build\lib.win-amd64-3.7\libact\models\multilabel copying libact\models\multilabel\dummy_clf.py -> build\lib.win-amd64-3.7\libact\models\multilabel copying libact\models\multilabel__init.py -> build\lib.win-amd64-3.7\libact\models\multilabel creating build\lib.win-amd64-3.7\libact\labelers copying libact\labelers\ideal_labeler.py -> build\lib.win-amd64-3.7\libact\labelers copying libact\labelers\interactive_labeler.py -> build\lib.win-amd64-3.7\libact\labelers copying libact\labelers\init__.py -> build\lib.win-amd64-3.7\libact\labelers creating build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\active_learning_by_learning.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\density_weighted_meta.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\density_weighted_uncertainty_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\hintsvm.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\query_by_committee.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\quire.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\random_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\uncertainty_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\variance_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies copying libact\query_strategies\init__.py -> build\lib.win-amd64-3.7\libact\query_strategies creating build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\adaptive_active_learning.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\binary_minimization.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\cost_sensitive_reference_pair_encoding.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\maximum_margin_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\multilabel_with_auxiliary_learner.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel copying libact\query_strategies\multilabel\init.py -> build\lib.win-amd64-3.7\libact\query_strategies\multilabel creating build\lib.win-amd64-3.7\libact\query_strategies\multiclass copying libact\query_strategies\multiclass\active_learning_with_cost_embedding.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass copying libact\query_strategies\multiclass\expected_error_reduction.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass copying libact\query_strategies\multiclass\hierarchical_sampling.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass copying libact\query_strategies\multiclass\mdsp.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass copying libact\query_strategies\multiclass\init__.py -> build\lib.win-amd64-3.7\libact\query_strategies\multiclass creating build\lib.win-amd64-3.7\libact\utils copying libact\utils\init__.py -> build\lib.win-amd64-3.7\libact\utils running build_ext No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils building 'libact.query_strategies._variance_reduction' extension creating build\temp.win-amd64-3.7 creating build\temp.win-amd64-3.7\Release creating build\temp.win-amd64-3.7\Release\libact creating build\temp.win-amd64-3.7\Release\libact\query_strategies creating build\temp.win-amd64-3.7\Release\libact\query_strategies\src creating build\temp.win-amd64-3.7\Release\libact\query_strategies\src\variance_reduction C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Users\21mor\Anaconda3\lib\site-packages\numpy\core\include -I/usr/include/ -IC:\Users\21mor\Anaconda3\include -IC:\Users\21mor\Anaconda3\include -IC:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\include -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\ucrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\shared -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\um -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\winrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\cppwinrt /Tclibact/query_strategies/src/variance_reduction/variance_reduction.c /Fobuild\temp.win-amd64-3.7\Release\libact/query_strategies/src/variance_reduction/variance_reduction.obj -std=c11 cl : Command line warning D9002 : ignoring unknown option '-std=c11' variance_reduction.c libact/query_strategies/src/variance_reduction/variance_reduction.c(5): fatal error C1083: Cannot open include file: 'lapacke.h': No such file or directory error: Command "C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Users\21mor\Anaconda3\lib\site-packages\numpy\core\include -I/usr/include/ -IC:\Users\21mor\Anaconda3\include -IC:\Users\21mor\Anaconda3\include -IC:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.26.28801\include -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\ucrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\shared -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\um -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\winrt -IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\cppwinrt /Tclibact/query_strategies/src/variance_reduction/variance_reduction.c /Fobuild\temp.win-amd64-3.7\Release\libact/query_strategies/src/variance_reduction/variance_reduction.obj -std=c11" failed with exit status 2

ERROR: Command errored out with exit status 1: 'C:\Users\21mor\Anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"'; file='"'"'C:\Users\21mor\AppData\Local\Temp\pip-install-5iwg9ffd\libact\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record 'C:\Users\21mor\AppData\Local\Temp\pip-record-67f50wqt\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\Users\21mor\Anaconda3\Include\libact' Check the logs for full command output.

yangarbiter commented 4 years ago

Can you try the following commands?

export LIBACT_BUILD_VARIANCE_REDUCTION=0
export LIBACT_BUILD_HINTSVM=0
pip install libact
leebanmorgan commented 4 years ago

I just tried that but it didn't work. I think export only works for linux? I did set instead and it worked on Windows though, thanks!