Attempted to run HMMs with all tastes bundled into one model. (with params[{'taste':['Suc','NaCl','CA','QHCl']) Everything runs ok until it's time to save, then I get the message:
ValueError Traceback (most recent call last)
~/hmm_script.py in <module>
18 handler = phmm.HmmHandler(rec_dir)
19 handler.add_params(params)
---> 20 handler.run(constraint_func = phmm.sequential_constraint)
~/miniconda3/envs/blechpy/lib/python3.7/site-packages/blechpy/analysis/poissonHMM.py in run(self, parallel, overwrite, constraint_func, n_cpu)
1312 1313 #self.plot_saved_models()
-> 1314 self.load_params()
1315 1316 def plot_spike_rasters(self):
~/miniconda3/envs/blechpy/lib/python3.7/site-packages/blechpy/analysis/poissonHMM.py in load_params(self)
1229 return
1230
-> 1231 overview = self.get_data_overview()
1232 if overview.empty:
1233 return
~/miniconda3/envs/blechpy/lib/python3.7/site-packages/blechpy/analysis/poissonHMM.py in get_data_overview(self)
1249 1250 def get_data_overview(self):
-> 1251 return hmmIO.get_hmm_overview_from_hdf5(self.h5_file)
1252 1253 def remove_params(self, index):
~/miniconda3/envs/blechpy/lib/python3.7/site-packages/blechpy/dio/hmmIO.py in get_hmm_overview_from_hdf5(h5_file)
291 params = []
292 for i in ids:
--> 293 _, _, _, _, p = read_hmm_from_hdf5(h5_file, i)
294 params.append(p)
295
~/miniconda3/envs/blechpy/lib/python3.7/site-packages/blechpy/dio/hmmIO.py in read_hmm_from_hdf5(h5_file, hmm_id)
112 113 if isinstance(params['taste'], list):
--> 114 params['channel'] = list_channel_hash(params['channel'])
115 116 return PI, A, B, stat_arrays, params
~/miniconda3/envs/blechpy/lib/python3.7/site-packages/blechpy/dio/hmmIO.py in list_channel_hash(num)
305 306 def list_channel_hash(num):
--> 307 tmp = [int(x) for x in str(num)]
308 return tmp[1:]
309
~/miniconda3/envs/blechpy/lib/python3.7/site-packages/blechpy/dio/hmmIO.py in <listcomp>(.0)
305 306 def list_channel_hash(num):
--> 307 tmp = [int(x) for x in str(num)]
308 return tmp[1:]
309
ValueError: invalid literal for int() with base 10: '-'
Will re-run on desktop with looser params to debug
Attempted to run HMMs with all tastes bundled into one model. (with params[{'taste':['Suc','NaCl','CA','QHCl']) Everything runs ok until it's time to save, then I get the message:
Will re-run on desktop with looser params to debug