rhyolight
commented
7 years ago What command are you running to install?
Open OPAYA opened 7 years ago
rhyolight
commented
7 years ago What command are you running to install?
OPAYA
commented
7 years ago I install "pip install nupic --user"
rhyolight
commented
7 years ago What operating system are you using? You might try installing Capnproto manually.
OPAYA
commented
7 years ago I use the Mac OS
rhyolight
commented
7 years ago Are you using the system python that came with Mac OS or did you install Anaconda or homebrew python?
Also what exact OS version?
OPAYA
commented
7 years ago I don't install Anaconda but have a homebrew
My Mac version is 10.12.1
rhyolight
commented
7 years ago Are you sure you have python development headers installed? The thing about "cython" above bothers me. Generally on a Mac, you need to use the system python or else things can go wrong quickly in your environment and it is very hard to debug the problem. Just make sure you have XCode command line tool installed, which should give you python development headers as well.
mohammadriazi
commented
6 years ago I've been trying to install nupic using pip install nupic on a Mac (v10.13 High Sierra).
and I receive this error:
I have installed Python 2.7 as a virtual environment and all of the requirements are installed.
Appreciate your help.
---------------------------------------- Failed building wheel for pycapnp Running setup.py clean for pycapnp Failed to build pycapnp Installing collected packages: pycapnp, nupic.bindings, unittest2, asteval, nupic Found existing installation: pycapnp 0.6.1 Uninstalling pycapnp-0.6.1: Successfully uninstalled pycapnp-0.6.1 Running setup.py install for pycapnp ... error Complete output from command /Users/mohammadriazi/Vpy27/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/nm/27rwjb4s1fz5fhx34pbnb_pc0000gn/T/pip-build-jEAZjS/pycapnp/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/nm/27rwjb4s1fz5fhx34pbnb_pc0000gn/T/pip-SSi8Pr-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/mohammadriazi/Vpy27/bin/../include/site/python2.7/pycapnp: Traceback (most recent call last): File "<string>", line 1, in <module> File "/private/var/folders/nm/27rwjb4s1fz5fhx34pbnb_pc0000gn/T/pip-build-jEAZjS/pycapnp/setup.py", line 92, in <module> from Cython.Distutils import build_ext as build_ext_c ImportError: No module named Cython.Distutils Rolling back uninstall of pycapnp Command "/Users/mohammadriazi/Vpy27/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/nm/27rwjb4s1fz5fhx34pbnb_pc0000gn/T/pip-build-jEAZjS/pycapnp/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/nm/27rwjb4s1fz5fhx34pbnb_pc0000gn/T/pip-SSi8Pr-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/mohammadriazi/Vpy27/bin/../include/site/python2.7/pycapnp" failed with error code 1 in /private/var/folders/nm/27rwjb4s1fz5fhx34pbnb_pc0000gn/T/pip-build-jEAZjS/pycapnp/
rhyolight
commented
6 years ago Does this help anyone? https://stackoverflow.com/questions/11108461/python-importerror-cython-distutils
bartwalczak
commented
6 years ago I have the same problem as @mohammadriazi with the same configuration - OS X 10.13, Python 2.7. Compilation of pycapnp fails. I installed Cython, tried installing pycapnp on my own, still fails with the following errors:
Collecting nupic
Using cached nupic-1.0.3-py2-none-any.whl
Requirement already satisfied: PyYAML==3.10 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from nupic)
Requirement already satisfied: coverage==3.7.1 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from nupic)
Requirement already satisfied: psutil==1.0.1 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from nupic)
Requirement already satisfied: DBUtils==1.1 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from nupic)
Collecting nupic.bindings==1.0.0 (from nupic)
Using cached nupic.bindings-1.0.0-cp27-cp27m-macosx_10_11_intel.whl
Requirement already satisfied: numpy==1.12.1 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from nupic)
Collecting validictory==0.9.1 (from nupic)
Requirement already satisfied: pytest-xdist==1.16.0 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from nupic)
Collecting asteval==0.9.1 (from nupic)
Collecting python-dateutil==2.1 (from nupic)
Collecting prettytable==0.7.2 (from nupic)
Requirement already satisfied: pytest==3.0.7 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from nupic)
Collecting unittest2==0.5.1 (from nupic)
Requirement already satisfied: pytest-cov==2.5.0 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from nupic)
Collecting ordereddict==1.1 (from nupic)
Collecting pyproj==1.9.3 (from nupic)
Collecting PyMySQL==0.6.2 (from nupic)
Using cached PyMySQL-0.6.2-py2.py3-none-any.whl
Collecting pycapnp==0.5.12; platform_system == "Linux" or platform_system == "Darwin" (from nupic)
Using cached pycapnp-0.5.12.tar.gz
Collecting mock==1.0.1 (from nupic)
Requirement already satisfied: py>=1.4.22 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from pytest-xdist==1.16.0->nupic)
Requirement already satisfied: execnet>=1.1 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from pytest-xdist==1.16.0->nupic)
Requirement already satisfied: six in /Users/bart/Library/Python/2.7/lib/python/site-packages (from python-dateutil==2.1->nupic)
Requirement already satisfied: setuptools in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from pytest==3.0.7->nupic)
Requirement already satisfied: apipkg>=1.4 in /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages (from execnet>=1.1->pytest-xdist==1.16.0->nupic)
Building wheels for collected packages: pycapnp
Running setup.py bdist_wheel for pycapnp ... error
Complete output from command /Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -u -c "import setuptools, tokenize;__file__='/private/var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/pip-build-9dcib9/pycapnp/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmpnI1YLZpip-wheel- --python-tag cp27:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.6-intel-2.7
creating build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/version.py -> build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/__init__.py -> build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/_gen.py -> build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/__init__.pxd -> build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/schema.capnp -> build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/c++.capnp -> build/lib.macosx-10.6-intel-2.7/capnp
creating build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/helpers.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/non_circular.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/__init__.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/rpcHelper.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/fixMaybe.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/capabilityHelper.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/asyncHelper.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/checkCompiler.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/serialize.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
creating build/lib.macosx-10.6-intel-2.7/capnp/includes
copying capnp/includes/types.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/includes
copying capnp/includes/__init__.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/includes
copying capnp/includes/schema_cpp.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/includes
copying capnp/includes/capnp_cpp.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/includes
creating build/lib.macosx-10.6-intel-2.7/capnp/lib
copying capnp/lib/capnp.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/lib
copying capnp/lib/__init__.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/lib
copying capnp/lib/__init__.py -> build/lib.macosx-10.6-intel-2.7/capnp/lib
copying capnp/lib/pickle_helper.py -> build/lib.macosx-10.6-intel-2.7/capnp/lib
copying capnp/lib/capnp.pyx -> build/lib.macosx-10.6-intel-2.7/capnp/lib
creating build/lib.macosx-10.6-intel-2.7/capnp/templates
copying capnp/templates/setup.py.tmpl -> build/lib.macosx-10.6-intel-2.7/capnp/templates
copying capnp/templates/module.pyx -> build/lib.macosx-10.6-intel-2.7/capnp/templates
running build_ext
creating var
creating var/folders
creating var/folders/7v
creating var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn
creating var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T
creating var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmpB6m7Cs
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c /var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmpB6m7Cs/vers.cpp -o var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmpB6m7Cs/vers.o --std=c++11
/usr/bin/clang -undefined dynamic_lookup var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmpB6m7Cs/vers.o -o /var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmpB6m7Cs/vers
building 'capnp.lib.capnp' extension
creating build/temp.macosx-10.6-intel-2.7
creating build/temp.macosx-10.6-intel-2.7/capnp
creating build/temp.macosx-10.6-intel-2.7/capnp/lib
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I. -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c capnp/lib/capnp.cpp -o build/temp.macosx-10.6-intel-2.7/capnp/lib/capnp.o --std=c++11
In file included from capnp/lib/capnp.cpp:286:
./capnp/helpers/rpcHelper.h:42:19: warning: 'restore' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
return client.restore(hostId, objectId.getRoot<capnp::AnyPointer>());
^
/usr/local/include/capnp/rpc.h:102:7: note: 'restore' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
In file included from capnp/lib/capnp.cpp:286:
./capnp/helpers/rpcHelper.h:49:19: warning: 'restore' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
return client.restore(hostId, objectId.getRoot<capnp::AnyPointer>());
^
/usr/local/include/capnp/rpc.h:102:7: note: 'restore' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
In file included from capnp/lib/capnp.cpp:286:
./capnp/helpers/rpcHelper.h:56:19: warning: 'restore' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
return client.restore(hostId, objectId);
^
/usr/local/include/capnp/rpc.h:102:7: note: 'restore' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
In file included from capnp/lib/capnp.cpp:286:
./capnp/helpers/rpcHelper.h:63:19: warning: 'restore' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
return client.restore(hostId, objectId);
^
/usr/local/include/capnp/rpc.h:102:7: note: 'restore' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
In file included from capnp/lib/capnp.cpp:286:
./capnp/helpers/rpcHelper.h:73:19: warning: 'restore' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
return client.restore(hostId, objectId);
^
/usr/local/include/capnp/rpc.h:102:7: note: 'restore' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
In file included from capnp/lib/capnp.cpp:286:
./capnp/helpers/rpcHelper.h:107:19: warning: 'makeRpcServer<capnp::rpc::twoparty::VatId, capnp::AnyPointer, capnp::rpc::twoparty::ProvisionId, capnp::rpc::twoparty::RecipientId, capnp::rpc::twoparty::ThirdPartyCapId, capnp::rpc::twoparty::JoinResult>' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
rpcSystem(makeRpcServer(network, restorer)) {}
^
/usr/local/include/capnp/rpc.h:199:5: note: 'makeRpcServer<capnp::rpc::twoparty::VatId, capnp::AnyPointer, capnp::rpc::twoparty::ProvisionId, capnp::rpc::twoparty::RecipientId, capnp::rpc::twoparty::ThirdPartyCapId, capnp::rpc::twoparty::JoinResult>' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
capnp/lib/capnp.cpp:31214:294: warning: moving a temporary object prevents copy elision [-Wpessimizing-move]
__pyx_t_1 = ((struct __pyx_vtabstruct_5capnp_3lib_5capnp__DynamicStructPipeline *)((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3)->__pyx_vtab)->_init(((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3), new ::capnp::DynamicStruct::Pipeline(std::move((( ::capnp::DynamicValue::Pipeline)__pyx_v_self->thisptr->get(__pyx_t_6)).releaseAs< ::capnp::DynamicStruct>())), __pyx_t_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1491; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
^
capnp/lib/capnp.cpp:31214:294: note: remove std::move call here
__pyx_t_1 = ((struct __pyx_vtabstruct_5capnp_3lib_5capnp__DynamicStructPipeline *)((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3)->__pyx_vtab)->_init(((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3), new ::capnp::DynamicStruct::Pipeline(std::move((( ::capnp::DynamicValue::Pipeline)__pyx_v_self->thisptr->get(__pyx_t_6)).releaseAs< ::capnp::DynamicStruct>())), __pyx_t_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1491; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
^~~~~~~~~~ ~
capnp/lib/capnp.cpp:35029:53: warning: moving a temporary object prevents copy elision [-Wpessimizing-move]
__pyx_v_self->thisptr = new ::kj::AsyncIoContext(std::move( ::kj::setupAsyncIo()));
^
capnp/lib/capnp.cpp:35029:53: note: remove std::move call here
__pyx_v_self->thisptr = new ::kj::AsyncIoContext(std::move( ::kj::setupAsyncIo()));
^~~~~~~~~~ ~
capnp/lib/capnp.cpp:35582:259: error: no matching conversion for functional-style cast from 'int64_t' (aka 'long long') to '::kj::Duration' (aka 'Quantity<long long, kj::_::NanosecondLabel>')
__pyx_t_2 = ((struct __pyx_vtabstruct_5capnp_3lib_5capnp__VoidPromise *)((struct __pyx_obj_5capnp_3lib_5capnp__VoidPromise *)__pyx_t_1)->__pyx_vtab)->_init(((struct __pyx_obj_5capnp_3lib_5capnp__VoidPromise *)__pyx_t_1), __pyx_v_self->thisptr->afterDelay( ::kj::Duration(__pyx_t_6)), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1691; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
^~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/include/kj/units.h:198:7: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'int64_t' (aka 'long long') to 'const kj::Quantity<long long, kj::_::NanosecondLabel>' for 1st argument
class Quantity {
^
/usr/local/include/kj/units.h:198:7: note: candidate constructor (the implicit move constructor) not viable: no known conversion from 'int64_t' (aka 'long long') to 'kj::Quantity<long long, kj::_::NanosecondLabel>' for 1st argument
/usr/local/include/kj/units.h:247:20: note: candidate constructor not viable: no known conversion from 'int64_t' (aka 'long long') to 'kj::MaxValue_' for 1st argument
inline constexpr Quantity(MaxValue_): value(maxValue) {}
^
/usr/local/include/kj/units.h:248:20: note: candidate constructor not viable: no known conversion from 'int64_t' (aka 'long long') to 'kj::MinValue_' for 1st argument
inline constexpr Quantity(MinValue_): value(minValue) {}
^
/usr/local/include/kj/units.h:259:20: note: candidate template ignored: could not match 'Quantity<type-parameter-0-0, kj::_::NanosecondLabel>' against 'long long'
inline constexpr Quantity(const Quantity<OtherNumber, Unit>& other)
^
/usr/local/include/kj/units.h:245:20: note: candidate constructor not viable: requires 0 arguments, but 1 was provided
inline constexpr Quantity() = default;
^
/usr/local/include/kj/units.h:254:20: note: candidate constructor not viable: requires 2 arguments, but 1 was provided
inline constexpr Quantity(Number value, decltype(unsafe)): value(value) {}
^
capnp/lib/capnp.cpp:41916:294: warning: moving a temporary object prevents copy elision [-Wpessimizing-move]
__pyx_t_1 = ((struct __pyx_vtabstruct_5capnp_3lib_5capnp__DynamicStructPipeline *)((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3)->__pyx_vtab)->_init(((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3), new ::capnp::DynamicStruct::Pipeline(std::move((( ::capnp::DynamicValue::Pipeline)__pyx_v_self->thisptr->get(__pyx_t_6)).releaseAs< ::capnp::DynamicStruct>())), __pyx_t_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1973; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
^
capnp/lib/capnp.cpp:41916:294: note: remove std::move call here
__pyx_t_1 = ((struct __pyx_vtabstruct_5capnp_3lib_5capnp__DynamicStructPipeline *)((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3)->__pyx_vtab)->_init(((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3), new ::capnp::DynamicStruct::Pipeline(std::move((( ::capnp::DynamicValue::Pipeline)__pyx_v_self->thisptr->get(__pyx_t_6)).releaseAs< ::capnp::DynamicStruct>())), __pyx_t_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1973; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
^~~~~~~~~~ ~
capnp/lib/capnp.cpp:51507:104: warning: 'makeRpcServer<capnp::rpc::twoparty::VatId, capnp::AnyPointer, capnp::rpc::twoparty::ProvisionId, capnp::rpc::twoparty::RecipientId, capnp::rpc::twoparty::ThirdPartyCapId, capnp::rpc::twoparty::JoinResult>' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
__pyx_v_self->thisptr = new ::capnp::RpcSystem<capnp::rpc::twoparty::SturdyRefHostId>( ::capnp::makeRpcServer((*__pyx_v_self->_network->thisptr), (*__pyx_v_self->_restorer->thisptr)));
^
/usr/local/include/capnp/rpc.h:199:5: note: 'makeRpcServer<capnp::rpc::twoparty::VatId, capnp::AnyPointer, capnp::rpc::twoparty::ProvisionId, capnp::rpc::twoparty::RecipientId, capnp::rpc::twoparty::ThirdPartyCapId, capnp::rpc::twoparty::JoinResult>' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
capnp/lib/capnp.cpp:54874:39: warning: 'getDependency' is deprecated: Does not handle generics correctly. [-Wdeprecated-declarations]
__pyx_t_8 = __pyx_v_self->thisptr.getDependency(__pyx_t_7);
^
/usr/local/include/capnp/schema.h:85:43: note: 'getDependency' has been explicitly marked deprecated here
Schema getDependency(uint64_t id) const KJ_DEPRECATED("Does not handle generics correctly.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
capnp/lib/capnp.cpp:56576:39: warning: 'getDependency' is deprecated: Does not handle generics correctly. [-Wdeprecated-declarations]
__pyx_t_8 = __pyx_v_self->thisptr.getDependency(__pyx_t_7);
^
/usr/local/include/capnp/schema.h:85:43: note: 'getDependency' has been explicitly marked deprecated here
Schema getDependency(uint64_t id) const KJ_DEPRECATED("Does not handle generics correctly.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
capnp/lib/capnp.cpp:58877:39: warning: 'getDependency' is deprecated: Does not handle generics correctly. [-Wdeprecated-declarations]
__pyx_t_8 = __pyx_v_self->thisptr.getDependency(__pyx_t_7);
^
/usr/local/include/capnp/schema.h:85:43: note: 'getDependency' has been explicitly marked deprecated here
Schema getDependency(uint64_t id) const KJ_DEPRECATED("Does not handle generics correctly.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
capnp/lib/capnp.cpp:246:5: warning: destructor called on non-final 'ErrorHandler' that has virtual functions but non-virtual destructor [-Wdelete-non-virtual-dtor]
x->~T();
^
capnp/lib/capnp.cpp:81903:3: note: in instantiation of function template specialization '__Pyx_call_destructor<ErrorHandler>' requested here
__Pyx_call_destructor(&p->_error_handler);
^
capnp/lib/capnp.cpp:246:9: note: qualify call to silence this warning
x->~T();
^
ErrorHandler::
14 warnings and 1 error generated.
error: command '/usr/bin/clang' failed with exit status 1
----------------------------------------
Failed building wheel for pycapnp
Running setup.py clean for pycapnp
Failed to build pycapnp
Installing collected packages: pycapnp, nupic.bindings, validictory, asteval, python-dateutil, prettytable, unittest2, ordereddict, pyproj, PyMySQL, mock, nupic
Running setup.py install for pycapnp ... error
Complete output from command /Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -u -c "import setuptools, tokenize;__file__='/private/var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/pip-build-9dcib9/pycapnp/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/pip-Qp1t0K-record/install-record.txt --single-version-externally-managed --compile:
Compiling capnp/lib/capnp.pyx because it changed.
[1/1] Cythonizing capnp/lib/capnp.pyx
running install
running build
running build_py
creating build
creating build/lib.macosx-10.6-intel-2.7
creating build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/version.py -> build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/__init__.py -> build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/_gen.py -> build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/__init__.pxd -> build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/schema.capnp -> build/lib.macosx-10.6-intel-2.7/capnp
copying capnp/c++.capnp -> build/lib.macosx-10.6-intel-2.7/capnp
creating build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/helpers.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/non_circular.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/__init__.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/rpcHelper.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/fixMaybe.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/capabilityHelper.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/asyncHelper.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/checkCompiler.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
copying capnp/helpers/serialize.h -> build/lib.macosx-10.6-intel-2.7/capnp/helpers
creating build/lib.macosx-10.6-intel-2.7/capnp/includes
copying capnp/includes/types.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/includes
copying capnp/includes/__init__.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/includes
copying capnp/includes/schema_cpp.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/includes
copying capnp/includes/capnp_cpp.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/includes
creating build/lib.macosx-10.6-intel-2.7/capnp/lib
copying capnp/lib/capnp.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/lib
copying capnp/lib/__init__.pxd -> build/lib.macosx-10.6-intel-2.7/capnp/lib
copying capnp/lib/__init__.py -> build/lib.macosx-10.6-intel-2.7/capnp/lib
copying capnp/lib/pickle_helper.py -> build/lib.macosx-10.6-intel-2.7/capnp/lib
copying capnp/lib/capnp.pyx -> build/lib.macosx-10.6-intel-2.7/capnp/lib
creating build/lib.macosx-10.6-intel-2.7/capnp/templates
copying capnp/templates/setup.py.tmpl -> build/lib.macosx-10.6-intel-2.7/capnp/templates
copying capnp/templates/module.pyx -> build/lib.macosx-10.6-intel-2.7/capnp/templates
running build_ext
creating var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmp0uKuBm
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c /var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmp0uKuBm/vers.cpp -o var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmp0uKuBm/vers.o --std=c++11
/usr/bin/clang -undefined dynamic_lookup var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmp0uKuBm/vers.o -o /var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/tmp0uKuBm/vers
building 'capnp.lib.capnp' extension
creating build/temp.macosx-10.6-intel-2.7
creating build/temp.macosx-10.6-intel-2.7/capnp
creating build/temp.macosx-10.6-intel-2.7/capnp/lib
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I. -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c capnp/lib/capnp.cpp -o build/temp.macosx-10.6-intel-2.7/capnp/lib/capnp.o --std=c++11
In file included from capnp/lib/capnp.cpp:576:
./capnp/helpers/rpcHelper.h:42:19: warning: 'restore' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
return client.restore(hostId, objectId.getRoot<capnp::AnyPointer>());
^
/usr/local/include/capnp/rpc.h:102:7: note: 'restore' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
In file included from capnp/lib/capnp.cpp:576:
./capnp/helpers/rpcHelper.h:49:19: warning: 'restore' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
return client.restore(hostId, objectId.getRoot<capnp::AnyPointer>());
^
/usr/local/include/capnp/rpc.h:102:7: note: 'restore' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
In file included from capnp/lib/capnp.cpp:576:
./capnp/helpers/rpcHelper.h:56:19: warning: 'restore' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
return client.restore(hostId, objectId);
^
/usr/local/include/capnp/rpc.h:102:7: note: 'restore' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
In file included from capnp/lib/capnp.cpp:576:
./capnp/helpers/rpcHelper.h:63:19: warning: 'restore' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
return client.restore(hostId, objectId);
^
/usr/local/include/capnp/rpc.h:102:7: note: 'restore' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
In file included from capnp/lib/capnp.cpp:576:
./capnp/helpers/rpcHelper.h:73:19: warning: 'restore' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
return client.restore(hostId, objectId);
^
/usr/local/include/capnp/rpc.h:102:7: note: 'restore' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
In file included from capnp/lib/capnp.cpp:576:
./capnp/helpers/rpcHelper.h:107:19: warning: 'makeRpcServer<capnp::rpc::twoparty::VatId, capnp::AnyPointer, capnp::rpc::twoparty::ProvisionId, capnp::rpc::twoparty::RecipientId, capnp::rpc::twoparty::ThirdPartyCapId, capnp::rpc::twoparty::JoinResult>' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
rpcSystem(makeRpcServer(network, restorer)) {}
^
/usr/local/include/capnp/rpc.h:199:5: note: 'makeRpcServer<capnp::rpc::twoparty::VatId, capnp::AnyPointer, capnp::rpc::twoparty::ProvisionId, capnp::rpc::twoparty::RecipientId, capnp::rpc::twoparty::ThirdPartyCapId, capnp::rpc::twoparty::JoinResult>' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
capnp/lib/capnp.cpp:35831:294: warning: moving a temporary object prevents copy elision [-Wpessimizing-move]
__pyx_t_1 = ((struct __pyx_vtabstruct_5capnp_3lib_5capnp__DynamicStructPipeline *)((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3)->__pyx_vtab)->_init(((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3), new ::capnp::DynamicStruct::Pipeline(std::move((( ::capnp::DynamicValue::Pipeline)__pyx_v_self->thisptr->get(__pyx_t_6)).releaseAs< ::capnp::DynamicStruct>())), __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1491, __pyx_L1_error)
^
capnp/lib/capnp.cpp:35831:294: note: remove std::move call here
__pyx_t_1 = ((struct __pyx_vtabstruct_5capnp_3lib_5capnp__DynamicStructPipeline *)((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3)->__pyx_vtab)->_init(((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3), new ::capnp::DynamicStruct::Pipeline(std::move((( ::capnp::DynamicValue::Pipeline)__pyx_v_self->thisptr->get(__pyx_t_6)).releaseAs< ::capnp::DynamicStruct>())), __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1491, __pyx_L1_error)
^~~~~~~~~~ ~
capnp/lib/capnp.cpp:40234:53: warning: moving a temporary object prevents copy elision [-Wpessimizing-move]
__pyx_v_self->thisptr = new ::kj::AsyncIoContext(std::move( ::kj::setupAsyncIo()));
^
capnp/lib/capnp.cpp:40234:53: note: remove std::move call here
__pyx_v_self->thisptr = new ::kj::AsyncIoContext(std::move( ::kj::setupAsyncIo()));
^~~~~~~~~~ ~
capnp/lib/capnp.cpp:40926:259: error: no matching conversion for functional-style cast from 'int64_t' (aka 'long long') to '::kj::Duration' (aka 'Quantity<long long, kj::_::NanosecondLabel>')
__pyx_t_2 = ((struct __pyx_vtabstruct_5capnp_3lib_5capnp__VoidPromise *)((struct __pyx_obj_5capnp_3lib_5capnp__VoidPromise *)__pyx_t_1)->__pyx_vtab)->_init(((struct __pyx_obj_5capnp_3lib_5capnp__VoidPromise *)__pyx_t_1), __pyx_v_self->thisptr->afterDelay( ::kj::Duration(__pyx_t_6)), NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1691, __pyx_L1_error)
^~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/include/kj/units.h:198:7: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'int64_t' (aka 'long long') to 'const kj::Quantity<long long, kj::_::NanosecondLabel>' for 1st argument
class Quantity {
^
/usr/local/include/kj/units.h:198:7: note: candidate constructor (the implicit move constructor) not viable: no known conversion from 'int64_t' (aka 'long long') to 'kj::Quantity<long long, kj::_::NanosecondLabel>' for 1st argument
/usr/local/include/kj/units.h:247:20: note: candidate constructor not viable: no known conversion from 'int64_t' (aka 'long long') to 'kj::MaxValue_' for 1st argument
inline constexpr Quantity(MaxValue_): value(maxValue) {}
^
/usr/local/include/kj/units.h:248:20: note: candidate constructor not viable: no known conversion from 'int64_t' (aka 'long long') to 'kj::MinValue_' for 1st argument
inline constexpr Quantity(MinValue_): value(minValue) {}
^
/usr/local/include/kj/units.h:259:20: note: candidate template ignored: could not match 'Quantity<type-parameter-0-0, kj::_::NanosecondLabel>' against 'long long'
inline constexpr Quantity(const Quantity<OtherNumber, Unit>& other)
^
/usr/local/include/kj/units.h:245:20: note: candidate constructor not viable: requires 0 arguments, but 1 was provided
inline constexpr Quantity() = default;
^
/usr/local/include/kj/units.h:254:20: note: candidate constructor not viable: requires 2 arguments, but 1 was provided
inline constexpr Quantity(Number value, decltype(unsafe)): value(value) {}
^
capnp/lib/capnp.cpp:48036:294: warning: moving a temporary object prevents copy elision [-Wpessimizing-move]
__pyx_t_1 = ((struct __pyx_vtabstruct_5capnp_3lib_5capnp__DynamicStructPipeline *)((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3)->__pyx_vtab)->_init(((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3), new ::capnp::DynamicStruct::Pipeline(std::move((( ::capnp::DynamicValue::Pipeline)__pyx_v_self->thisptr->get(__pyx_t_6)).releaseAs< ::capnp::DynamicStruct>())), __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1973, __pyx_L1_error)
^
capnp/lib/capnp.cpp:48036:294: note: remove std::move call here
__pyx_t_1 = ((struct __pyx_vtabstruct_5capnp_3lib_5capnp__DynamicStructPipeline *)((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3)->__pyx_vtab)->_init(((struct __pyx_obj_5capnp_3lib_5capnp__DynamicStructPipeline *)__pyx_t_3), new ::capnp::DynamicStruct::Pipeline(std::move((( ::capnp::DynamicValue::Pipeline)__pyx_v_self->thisptr->get(__pyx_t_6)).releaseAs< ::capnp::DynamicStruct>())), __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1973, __pyx_L1_error)
^~~~~~~~~~ ~
capnp/lib/capnp.cpp:59189:104: warning: 'makeRpcServer<capnp::rpc::twoparty::VatId, capnp::AnyPointer, capnp::rpc::twoparty::ProvisionId, capnp::rpc::twoparty::RecipientId, capnp::rpc::twoparty::ThirdPartyCapId, capnp::rpc::twoparty::JoinResult>' is deprecated: Please transition to using a bootstrap interface instead. [-Wdeprecated-declarations]
__pyx_v_self->thisptr = new ::capnp::RpcSystem<capnp::rpc::twoparty::SturdyRefHostId>( ::capnp::makeRpcServer((*__pyx_v_self->_network->thisptr), (*__pyx_v_self->_restorer->thisptr)));
^
/usr/local/include/capnp/rpc.h:199:5: note: 'makeRpcServer<capnp::rpc::twoparty::VatId, capnp::AnyPointer, capnp::rpc::twoparty::ProvisionId, capnp::rpc::twoparty::RecipientId, capnp::rpc::twoparty::ThirdPartyCapId, capnp::rpc::twoparty::JoinResult>' has been explicitly marked deprecated here
KJ_DEPRECATED("Please transition to using a bootstrap interface instead.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
capnp/lib/capnp.cpp:63075:39: warning: 'getDependency' is deprecated: Does not handle generics correctly. [-Wdeprecated-declarations]
__pyx_t_7 = __pyx_v_self->thisptr.getDependency(__pyx_t_6);
^
/usr/local/include/capnp/schema.h:85:43: note: 'getDependency' has been explicitly marked deprecated here
Schema getDependency(uint64_t id) const KJ_DEPRECATED("Does not handle generics correctly.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
capnp/lib/capnp.cpp:64889:39: warning: 'getDependency' is deprecated: Does not handle generics correctly. [-Wdeprecated-declarations]
__pyx_t_7 = __pyx_v_self->thisptr.getDependency(__pyx_t_6);
^
/usr/local/include/capnp/schema.h:85:43: note: 'getDependency' has been explicitly marked deprecated here
Schema getDependency(uint64_t id) const KJ_DEPRECATED("Does not handle generics correctly.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
capnp/lib/capnp.cpp:67552:39: warning: 'getDependency' is deprecated: Does not handle generics correctly. [-Wdeprecated-declarations]
__pyx_t_7 = __pyx_v_self->thisptr.getDependency(__pyx_t_6);
^
/usr/local/include/capnp/schema.h:85:43: note: 'getDependency' has been explicitly marked deprecated here
Schema getDependency(uint64_t id) const KJ_DEPRECATED("Does not handle generics correctly.");
^
/usr/local/include/kj/common.h:192:20: note: expanded from macro 'KJ_DEPRECATED'
__attribute__((deprecated(reason)))
^
capnp/lib/capnp.cpp:520:5: warning: destructor called on non-final 'ErrorHandler' that has virtual functions but non-virtual destructor [-Wdelete-non-virtual-dtor]
x.~T();
^
capnp/lib/capnp.cpp:97037:3: note: in instantiation of function template specialization '__Pyx_call_destructor<ErrorHandler>' requested here
__Pyx_call_destructor(p->_error_handler);
^
capnp/lib/capnp.cpp:520:8: note: qualify call to silence this warning
x.~T();
^
ErrorHandler::
14 warnings and 1 error generated.
error: command '/usr/bin/clang' failed with exit status 1
----------------------------------------
Command "/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -u -c "import setuptools, tokenize;__file__='/private/var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/pip-build-9dcib9/pycapnp/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/pip-Qp1t0K-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/7v/x68mgp4j26v1fc1n46z0z0jw0000gn/T/pip-build-9dcib9/pycapnp/I haven't updated to High Sierra yet, but I'll ask around the office and see if anyone else has run into this problem after upgrading. @scottpurdy ?
scottpurdy
commented
6 years ago @OPAYA and @bartwalczak - this looks like a homebrew-Python-specific issue with pycapnp. You have a few options:
--no-deps option during pip install. Then you will have to manually install the other dependencies like numpy, etc (found in requirements.txt) and you might have to also include --no-deps when installing other nupic repos.No ideal options, I realize, but we have ran into many issues with C bindings and brewed Python so decided a while back not to support that setup.
bartwalczak
commented
6 years ago I don't think this is brew Python in my case, because I didn't install Python with brew:
brew list
aspcud geoip mysql
bro go nifi
camlp4 gringo ocaml
capnp icu4c ocamlbuild
clasp jenv opam
delve kops openssl
docker-machine kubernetes-cli pcre
docker-machine-driver-xhyve libev swigI tried switching to /usr/local/bin/python, but still the same pycapnp error appears, whether I use CFLAGS to enable stdlib C++11 or not.
bartwalczak
commented
6 years ago What finally worked for me:
brew uninstall capnp
export MACOSX_DEPLOYMENT_TARGET=10.10
CFLAGS='-stdlib=libc++' pip install nupic@bartwalczak good work finding a fix!
Hi, I wanna install nupic for MNIST
but I have a problem while install nupic