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numericalalgorithmsgroup / pypop

Python Tools for the POP Metrics
https://numericalalgorithmsgroup.github.io/pypop/doc.html
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Multi-locus Analysis #42

Closed Nash0990 closed 3 years ago

Nash0990 commented 3 years ago

Ran an analysis on ~25000 samples with 5 locus each, analysis runs smooth but when in the results looks like the Multi-locus analysis was not performed with the comment saying "Too many rows for haplotype program" and also blank Pairwise LD estimates.

Is there a way to process this huge number of samples?

ptooley commented 3 years ago

Hi @Nash0990 I believe you have the wrong project. I think the PyPOP genomics repository is here: https://github.com/alexlancaster/pypop