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numpy / numpy

The fundamental package for scientific computing with Python.
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`spin ipython` failing #27432

Open adrinjalali opened 1 day ago

adrinjalali commented 1 day ago

Trying spin ipython fails with the following error:

$ spin ipython       
$ /home/adrin/micromamba/envs/numpy/bin/python3.12 vendored-meson/meson/meson.py compile -C build
INFO: autodetecting backend as ninja
INFO: calculating backend command to run: /home/adrin/micromamba/envs/numpy/bin/ninja -C /home/adrin/Projects/gh/me/numpy/build
ninja: Entering directory `/home/adrin/Projects/gh/me/numpy/build'
[1/1] Generating numpy/generate-version with a custom command
Saving version to numpy/version.py
$ /home/adrin/micromamba/envs/numpy/bin/python3.12 vendored-meson/meson/meson.py install --only-changed -C build --destdir ../build-install

Traceback (most recent call last):
  File "/home/adrin/micromamba/envs/numpy/lib/python3.12/site-packages/click/core.py", line 783, in invoke
    return __callback(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/adrin/micromamba/envs/numpy/lib/python3.12/site-packages/click/decorators.py", line 33, in new_func
    return f(get_current_context(), *args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/adrin/Projects/gh/me/numpy/.spin/cmds.py", line 682, in ipython
    ppath = meson._set_pythonpath()
            ^^^^^^^^^^^^^^^^^^^^^^^
TypeError: _set_pythonpath() missing 1 required positional argument: 'build_dir'

An internal error has occurred. Please file a bug report at

  https://github.com/scientific-python/spin

including the above traceback and the following information:

  spin: 0.12, package: numpy

Aborting.

spin python and spin build and spin test work as expected.

Installed package info:

```sh $ mmamba list List of packages in environment: "/home/adrin/micromamba/envs/numpy" Name Version Build Channel ───────────────────────────────────────────────────────────────────────────────── _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge accessible-pygments 0.0.4 pyhd8ed1ab_0 conda-forge alabaster 0.7.16 pyhd8ed1ab_0 conda-forge alsa-lib 1.2.11 hd590300_1 conda-forge asttokens 2.4.1 pyhd8ed1ab_0 conda-forge attr 2.5.1 h166bdaf_1 conda-forge attrs 23.2.0 pyh71513ae_0 conda-forge babel 2.14.0 pyhd8ed1ab_0 conda-forge backports.zoneinfo 0.2.1 py312h7900ff3_8 conda-forge beautifulsoup4 4.12.3 pyha770c72_0 conda-forge binutils 2.40 h4852527_0 conda-forge binutils_impl_linux-64 2.40 ha885e6a_0 conda-forge binutils_linux-64 2.40 hdade7a5_3 conda-forge breathe 4.35.0 pyhd8ed1ab_1 conda-forge brotli 1.1.0 hd590300_1 conda-forge brotli-bin 1.1.0 hd590300_1 conda-forge brotli-python 1.1.0 py312h30efb56_1 conda-forge bzip2 1.0.8 hd590300_5 conda-forge c-compiler 1.7.0 hd590300_1 conda-forge ca-certificates 2024.2.2 hbcca054_0 conda-forge cairo 1.18.0 h3faef2a_0 conda-forge ccache 4.9.1 h1fcd64f_0 conda-forge certifi 2024.2.2 pyhd8ed1ab_0 conda-forge cffi 1.16.0 py312hf06ca03_0 conda-forge charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge click 8.1.7 unix_pyh707e725_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge compilers 1.7.0 ha770c72_1 conda-forge contourpy 1.2.1 py312h8572e83_0 conda-forge coverage 7.5.1 py312h9a8786e_0 conda-forge cxx-compiler 1.7.0 h00ab1b0_1 conda-forge cycler 0.12.1 pyhd8ed1ab_0 conda-forge cython 3.0.10 py312h30efb56_0 conda-forge dbus 1.13.6 h5008d03_3 conda-forge decorator 5.1.1 pyhd8ed1ab_0 conda-forge docutils 0.17.1 py312h7900ff3_5 conda-forge doxygen 1.10.0 h661eb56_0 conda-forge exceptiongroup 1.2.0 pyhd8ed1ab_2 conda-forge execnet 2.1.1 pyhd8ed1ab_0 conda-forge executing 2.0.1 pyhd8ed1ab_0 conda-forge expat 2.6.2 h59595ed_0 conda-forge font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge font-ttf-inconsolata 3.000 h77eed37_0 conda-forge font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge font-ttf-ubuntu 0.83 h77eed37_2 conda-forge fontconfig 2.14.2 h14ed4e7_0 conda-forge fonts-conda-ecosystem 1 0 conda-forge fonts-conda-forge 1 0 conda-forge fonttools 4.51.0 py312h98912ed_0 conda-forge fortran-compiler 1.7.0 heb67821_1 conda-forge freetype 2.12.1 h267a509_2 conda-forge gcc 12.3.0 h915e2ae_7 conda-forge gcc_impl_linux-64 12.3.0 h58ffeeb_7 conda-forge gcc_linux-64 12.3.0 h6477408_3 conda-forge gettext 0.22.5 h59595ed_2 conda-forge gettext-tools 0.22.5 h59595ed_2 conda-forge gfortran 12.3.0 h915e2ae_7 conda-forge gfortran_impl_linux-64 12.3.0 h1645026_7 conda-forge gfortran_linux-64 12.3.0 h617cb40_3 conda-forge gitdb 4.0.11 pyhd8ed1ab_0 conda-forge gitpython 3.1.43 pyhd8ed1ab_0 conda-forge glib 2.80.2 hf974151_0 conda-forge glib-tools 2.80.2 hb6ce0ca_0 conda-forge graphite2 1.3.13 h59595ed_1003 conda-forge gst-plugins-base 1.24.3 h9ad1361_0 conda-forge gstreamer 1.24.3 haf2f30d_0 conda-forge gxx 12.3.0 h915e2ae_7 conda-forge gxx_impl_linux-64 12.3.0 h2a574ab_7 conda-forge gxx_linux-64 12.3.0 h4a1b8e8_3 conda-forge harfbuzz 8.4.0 h3d44ed6_0 conda-forge hypothesis 6.101.0 pyha770c72_0 conda-forge icu 73.2 h59595ed_0 conda-forge idna 3.7 pyhd8ed1ab_0 conda-forge imagesize 1.4.1 pyhd8ed1ab_0 conda-forge importlib-metadata 7.1.0 pyha770c72_0 conda-forge iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge ipython 8.24.0 pyh707e725_0 conda-forge jedi 0.19.1 pyhd8ed1ab_0 conda-forge jinja2 3.1.4 pyhd8ed1ab_0 conda-forge kernel-headers_linux-64 2.6.32 he073ed8_17 conda-forge keyutils 1.6.1 h166bdaf_0 conda-forge kiwisolver 1.4.5 py312h8572e83_1 conda-forge krb5 1.21.2 h659d440_0 conda-forge lame 3.100 h166bdaf_1003 conda-forge lcms2 2.16 hb7c19ff_0 conda-forge ld_impl_linux-64 2.40 h55db66e_0 conda-forge lerc 4.0.0 h27087fc_0 conda-forge libasprintf 0.22.5 h661eb56_2 conda-forge libasprintf-devel 0.22.5 h661eb56_2 conda-forge libblas 3.9.0 22_linux64_openblas conda-forge libbrotlicommon 1.1.0 hd590300_1 conda-forge libbrotlidec 1.1.0 hd590300_1 conda-forge libbrotlienc 1.1.0 hd590300_1 conda-forge libcap 2.69 h0f662aa_0 conda-forge libcblas 3.9.0 22_linux64_openblas conda-forge libclang-cpp15 15.0.7 default_h127d8a8_5 conda-forge libclang13 18.1.5 default_h5d6823c_0 conda-forge libcups 2.3.3 h4637d8d_4 conda-forge libdeflate 1.20 hd590300_0 conda-forge libedit 3.1.20191231 he28a2e2_2 conda-forge libevent 2.1.12 hf998b51_1 conda-forge libexpat 2.6.2 h59595ed_0 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libflac 1.4.3 h59595ed_0 conda-forge libgcc-devel_linux-64 12.3.0 h0223996_107 conda-forge libgcc-ng 13.2.0 h77fa898_7 conda-forge libgcrypt 1.10.3 hd590300_0 conda-forge libgettextpo 0.22.5 h59595ed_2 conda-forge libgettextpo-devel 0.22.5 h59595ed_2 conda-forge libgfortran-ng 13.2.0 h69a702a_7 conda-forge libgfortran5 13.2.0 hca663fb_7 conda-forge libglib 2.80.2 hf974151_0 conda-forge libgomp 13.2.0 h77fa898_7 conda-forge libgpg-error 1.49 h4f305b6_0 conda-forge libhiredis 1.0.2 h2cc385e_0 conda-forge libiconv 1.17 hd590300_2 conda-forge libjpeg-turbo 3.0.0 hd590300_1 conda-forge liblapack 3.9.0 22_linux64_openblas conda-forge libllvm15 15.0.7 hb3ce162_4 conda-forge libllvm18 18.1.5 hb77312f_0 conda-forge libnsl 2.0.1 hd590300_0 conda-forge libogg 1.3.4 h7f98852_1 conda-forge libopenblas 0.3.27 pthreads_h413a1c8_0 conda-forge libopus 1.3.1 h7f98852_1 conda-forge libpng 1.6.43 h2797004_0 conda-forge libpq 16.3 ha72fbe1_0 conda-forge libsanitizer 12.3.0 hb8811af_7 conda-forge libsndfile 1.2.2 hc60ed4a_1 conda-forge libsqlite 3.45.3 h2797004_0 conda-forge libstdcxx-devel_linux-64 12.3.0 h0223996_107 conda-forge libstdcxx-ng 13.2.0 hc0a3c3a_7 conda-forge libsystemd0 255 h3516f8a_1 conda-forge libtiff 4.6.0 h1dd3fc0_3 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libvorbis 1.3.7 h9c3ff4c_0 conda-forge libwebp-base 1.4.0 hd590300_0 conda-forge libxcb 1.15 h0b41bf4_0 conda-forge libxcrypt 4.4.36 hd590300_1 conda-forge libxkbcommon 1.7.0 h662e7e4_0 conda-forge libxml2 2.12.6 h232c23b_2 conda-forge libzlib 1.2.13 hd590300_5 conda-forge lz4-c 1.9.4 hcb278e6_0 conda-forge markupsafe 2.1.5 py312h98912ed_0 conda-forge matplotlib 3.8.4 py312h7900ff3_0 conda-forge matplotlib-base 3.8.4 py312he5832f3_0 conda-forge matplotlib-inline 0.1.7 pyhd8ed1ab_0 conda-forge meson 1.5.1 pyhd8ed1ab_1 conda-forge meson-python 0.16.0 pyh0c530f3_0 conda-forge mpg123 1.32.6 h59595ed_0 conda-forge munkres 1.1.4 pyh9f0ad1d_0 conda-forge mypy 1.7.1 py312h98912ed_1 conda-forge mypy_extensions 1.0.0 pyha770c72_0 conda-forge mysql-common 8.3.0 hf1915f5_4 conda-forge mysql-libs 8.3.0 hca2cd23_4 conda-forge ncurses 6.5 h59595ed_0 conda-forge ninja 1.12.1 h297d8ca_0 conda-forge nomkl 1.0 h5ca1d4c_0 conda-forge nspr 4.35 h27087fc_0 conda-forge nss 3.100 hca3bf56_0 conda-forge numpy 1.26.4 py312heda63a1_0 conda-forge numpydoc 1.4.0 pyhd8ed1ab_1 conda-forge openblas 0.3.27 pthreads_h7a3da1a_0 conda-forge openjpeg 2.5.2 h488ebb8_0 conda-forge openssl 3.3.0 hd590300_0 conda-forge packaging 24.0 pyhd8ed1ab_0 conda-forge parso 0.8.4 pyhd8ed1ab_0 conda-forge pcre2 10.43 hcad00b1_0 conda-forge pexpect 4.9.0 pyhd8ed1ab_0 conda-forge pickleshare 0.7.5 py_1003 conda-forge pillow 10.3.0 py312hdcec9eb_0 conda-forge pip 24.0 pyhd8ed1ab_0 conda-forge pixman 0.43.2 h59595ed_0 conda-forge pkg-config 0.29.2 h36c2ea0_1008 conda-forge pluggy 1.5.0 pyhd8ed1ab_0 conda-forge ply 3.11 pyhd8ed1ab_2 conda-forge prompt-toolkit 3.0.42 pyha770c72_0 conda-forge psutil 5.9.8 py312h98912ed_0 conda-forge pthread-stubs 0.4 h36c2ea0_1001 conda-forge ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge pulseaudio-client 17.0 hb77b528_0 conda-forge pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge pycodestyle 2.8.0 pyhd8ed1ab_0 conda-forge pycparser 2.22 pyhd8ed1ab_0 conda-forge pydata-sphinx-theme 0.13.3 pyhd8ed1ab_0 conda-forge pygments 2.18.0 pyhd8ed1ab_0 conda-forge pyparsing 3.1.2 pyhd8ed1ab_0 conda-forge pyproject-metadata 0.8.0 pyhd8ed1ab_0 conda-forge pyqt 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sphinxcontrib-devhelp 1.0.6 pyhd8ed1ab_0 conda-forge sphinxcontrib-htmlhelp 2.0.5 pyhd8ed1ab_0 conda-forge sphinxcontrib-jsmath 1.0.1 pyhd8ed1ab_0 conda-forge sphinxcontrib-qthelp 1.0.7 pyhd8ed1ab_0 conda-forge sphinxcontrib-serializinghtml 1.1.10 pyhd8ed1ab_0 conda-forge stack_data 0.6.2 pyhd8ed1ab_0 conda-forge sysroot_linux-64 2.12 he073ed8_17 conda-forge tk 8.6.13 noxft_h4845f30_101 conda-forge toml 0.10.2 pyhd8ed1ab_0 conda-forge tomli 2.0.1 pyhd8ed1ab_0 conda-forge tornado 6.4 py312h98912ed_0 conda-forge traitlets 5.14.3 pyhd8ed1ab_0 conda-forge typing_extensions 4.11.0 pyha770c72_0 conda-forge tzdata 2024a h0c530f3_0 conda-forge urllib3 2.2.1 pyhd8ed1ab_0 conda-forge wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge wheel 0.43.0 pyhd8ed1ab_1 conda-forge xcb-util 0.4.0 hd590300_1 conda-forge xcb-util-image 0.4.0 h8ee46fc_1 conda-forge xcb-util-keysyms 0.4.0 h8ee46fc_1 conda-forge xcb-util-renderutil 0.3.9 hd590300_1 conda-forge xcb-util-wm 0.4.1 h8ee46fc_1 conda-forge xkeyboard-config 2.41 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tylerjereddy commented 1 day ago

This seems to do the trick for spin 0.12, assuming we're "ok" with delaying support for custom development build dirs:

--- a/.spin/cmds.py
+++ b/.spin/cmds.py
@@ -679,7 +679,8 @@ def ipython(ctx, ipython_args):

     ctx.invoke(build)

-    ppath = meson._set_pythonpath()
+    # TODO: support custom build directory
+    ppath = meson._set_pythonpath("build")

It also seems to still work with spin 0.11. This is presumably the result of https://github.com/scientific-python/spin/pull/221. I'll defer to @stefanv if that patch might suffice or if they want to put the work in to support the custom build dir right away.

stefanv commented 1 day ago

Great, can apply that patch here: https://github.com/numpy/numpy/pull/27371