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nuno-agostinho
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psichomics
Interactive R package to quantify, analyse and visualise alternative splicing
http://nuno-agostinho.github.io/psichomics/
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1.18.6
#431
Closed
nuno-agostinho
closed
2 years ago
nuno-agostinho
commented
2 years ago
ShinyProxy support
psichomics()
: add argument
shinyproxy
; when set to
TRUE
, change set of options to viably run in ShinyProxy
Avoid automatically closing the app
Replace custom file browsers with shiny's versions
Fix issues with progress bar
Include ShinyBS JavaScript library
Upload files using default file browser input and allow to upload a ZIP folder instead of a folder
Bug fixes
Fix issues with Shiny 1.7.0:
Change icon names as required by newest versions of font-awesome
Avoid modifying Shiny tags using generic positions
Load recount data (visual interface):
Improve responsiveness of project selection
Splicing annotation (visual interface):
Load annotation only when opening the splicing quantification tab
Automatically select hg38 if using GTEx v8 data
PCA plot (visual interface):
Automatically plot PCA after calculating PCA scores
Copy-edit text
Fix specific errors related with PCA analysis of only one group
Diagrams of alternative splicing events:
Fix wrong coloring of reference exon used for AFE and A5SS events
Transcript plot:
Orange region (the reference exon) is now on top of blue region
ShinyProxy support
psichomics()
: add argumentshinyproxy
; when set toTRUE
, change set of options to viably run in ShinyProxyBug fixes