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nuno-agostinho / psichomics

Interactive R package to quantify, analyse and visualise alternative splicing
http://nuno-agostinho.github.io/psichomics/
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importing rMATS dPSI #433

Open herber4 opened 3 years ago

herber4 commented 3 years ago

Hi Psichomics,

How would I go about getting the dPSI values generated by rMATs into psichomics?

Best,

Austin

nuno-agostinho commented 3 years ago

Hey @herber4! Basically, you need to create a TSV file with a table containing the PSI values like so:

AS Event ID Sample-18 Sample-03
someASevent001 0.71 0.30
anotherASevent653 0.63 0.37
yetAnother097 0.38 0.62

Please check this page on how to load alternative splicing quantification data from any source in psichomics.

If you have further questions, feel free to ask! :)

Best, Nuno