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nunofonseca / irap

integrated RNA-seq Analysis Pipeline
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sample name do not match #102

Open sb43 opened 5 years ago

sb43 commented 5 years ago

hyphen in sample name is replaced with dot, this causes unmatched column names: [INFO 08/01-10:25] colansmesC666-1_RNA [INFO 08/01-10:25] out.tableC666.1_RNA [ERROR] Colnames do not match C666-1_RNA/irap_qc/tophat2/featstats_raw.tsv

Please refer full log for more details:

[INFO 08/01-10:25] C666-1_RNA/irap_qc/tophat2/stats_raw.tsv [INFO 08/01-10:25] C666-1_RNA/irap_qc/tophat2/featstats_raw.tsv [INFO 08/01-10:25] C666-1_RNA/irap_qc/tophat2/genestats_raw.tsv [INFO 08/01-10:25] Processing 1 33.33%:C666-1_RNA/irap_qc/tophat2/stats_raw.tsv. [INFO 08/01-10:25] Processing 2 66.67%:C666-1_RNA/irap_qc/tophat2/featstats_raw.tsv. [INFO 08/01-10:25] colansmesC666-1_RNA [INFO 08/01-10:25] out.tableC666.1_RNA [ERROR] Colnames do not match C666-1_RNA/irap_qc/tophat2/featstats_raw.tsv /opt/irap/scripts/../aux/mk/irap_qc_stats.mk:109: recipe for target 'C666-1_RNA/irap_qc/tophat2/libs_qc.tsv' failed make: *** [C666-1_RNA/irap_qc/tophat2/libs_qc.tsv] Error 1