nunofonseca / irap

integrated RNA-seq Analysis Pipeline
GNU General Public License v3.0
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irap install within docker image fails on Perl GD-2.56 module installation #12

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago
What steps will reproduce the problem?
1.docker build <pathToDockerFile>
2.wait for many packages to be installed

What is the expected output? What do you see instead?

That no package installation returns a non-zero code, instead:

Running make for L/LD/LDS/GD-2.56.tar.gz
Warning: Prerequisite 'Module::Build => 0.42' for 'LDS/GD-2.56.tar.gz' failed 
when processing 'LEONT/Module-Build-0.4210.tar.gz' with 'make_test => FAILED 
but failure ignored because 'force' in effect'. Continuing, but chances to 
succeed are limited.

  CPAN.pm: Building L/LD/LDS/GD-2.56.tar.gz

Configuring for libgd version 2.1.0.
Checking for stray libgd header files...none found.

Unknown option: install_base
Usage: perl Build.PL [options]

Configure GD module.

 Options:
     -options       "JPEG,FT,PNG,GIF,XPM,ANIMGIF"   feature options, separated by commas
     -lib_gd_path   path            path to libgd
     -lib_ft_path   path            path to Freetype library
     -lib_png_path  path            path to libpng
     -lib_jpeg_path path            path to libjpeg
     -lib_xpm_path  path            path to libxpm
     -lib_zlib_path path            path to libpng
     -ignore_missing_gd             Ignore missing or old libgd installations and try to compile anyway

If no options are passed on the command line.  The program will
attempt to autoconfigure itself with the gdlib-config program (present
in GD versions 2.0.27 or later).  Otherwise it will prompt for these
values interactively.
Warning: No success on command[/irap_install/bin/perl Build.PL --install_base 
/irap_install/perl]
  LDS/GD-2.56.tar.gz
  /irap_install/bin/perl Build.PL --install_base /irap_install/perl -- NOT OK
Running Build test
  Make had some problems, won't test
Running Build install
  Make had some problems, won't install
Could not read metadata file. Falling back to other methods to determine 
prerequisites
2014/11/25 19:55:49 The command [/bin/sh -c ./scripts/irap_install.sh -a 
/irap_install -s .] returned a non-zero code: 1

What version of the product are you using? On what operating system?

dockerfile from the google code repo. The docker image uses fedora.

Please provide any additional information below.

Original issue reported on code.google.com by pablo.a....@gmail.com on 26 Nov 2014 at 10:18

GoogleCodeExporter commented 9 years ago
Fixed in latest release. Thanks for the report.

Original comment by nuno.fon...@gmail.com on 3 Mar 2015 at 5:24