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nunofonseca / irap

integrated RNA-seq Analysis Pipeline
GNU General Public License v3.0
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gnpplot #27

Closed jodyphelan closed 6 years ago

jodyphelan commented 7 years ago

Hi,

I noticed that the gnuplot packaged with irap does not support png.

The command set term shows this:

Available terminal types: canvas HTML Canvas object cgm Computer Graphics Metafile context ConTeXt with MetaFun (for PDF documents) corel EPS format for CorelDRAW dumb ascii art for anything that prints text dxf dxf-file for AutoCad (default size 120x80) eepic EEPIC -- extended LaTeX picture environment emf Enhanced Metafile format emtex LaTeX picture environment with emTeX specials epslatex LaTeX picture environment using graphicx package fig FIG graphics language for XFIG graphics editor gpic GPIC -- Produce graphs in groff using the gpic preprocessor hp2623A HP2623A and maybe others hp2648 HP2648 and HP2647 hpgl HP7475 and relatives [number of pens] [eject] imagen Imagen laser printer latex LaTeX picture environment mf Metafont plotting standard mif Frame maker MIF 3.00 format mp MetaPost plotting standard pcl5 HP Designjet 750C, HP Laserjet III/IV, etc. (many options) postscript PostScript graphics, including EPSF embedded files (*.eps) pslatex LaTeX picture environment with PostScript \specials pstex plain TeX with PostScript \specials pstricks LaTeX picture environment with PSTricks macros qms QMS/QUIC Laser printer (also Talaris 1200 and others) regis REGIS graphics language svg W3C Scalable Vector Graphics driver tek40xx Tektronix 4010 and others; most TEK emulators tek410x Tektronix 4106, 4107, 4109 and 420X terminals texdraw LaTeX texdraw environment tgif TGIF X11 [mode] [x,y] [dashed] ["font" [fontsize]] tkcanvas Tk/Tcl canvas widget [perltk] [interactive] tpic TPIC -- LaTeX picture environment with tpic \specials unknown Unknown terminal type - not a plotting device vttek VT-like tek40xx terminal emulator xterm Xterm Tektronix 4014 Mode

This makes it throw an error for some parts of the irap pipeline: set term png size 2048,768

I'm running Ubuntu 64-bit 14.04 LTS

Thanks, Jody

nunofonseca commented 7 years ago

Thanks, I'll try to replicate the issue on Ubuntu.

wangyugui commented 7 years ago

Hi @jodyphelan @nunofonseca

on CentOS 7.4, we need to install packages gd-progs and gd-devel to support gnuplot png output.

nunofonseca commented 6 years ago

This issue is solved in the upcoming (devel branch) new version of iRAP. Please reopen if the problem persists in the new version. Cheers.