iRAP's Kallisto call seems to provide read length at fragment size parameter

nunofonseca / irap

integrated RNA-seq Analysis Pipeline

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iRAP's Kallisto call seems to provide read length at fragment size parameter #67

Closed pinin4fjords closed 6 years ago

pinin4fjords commented 6 years ago

Hi Nuno,

Why does the Kallisto command specify read length for the fragment size parameter (-l)? That's unlikely be be correct most of the time, and with paired-end data Kallisto can determine the value itself.

nunofonseca commented 6 years ago

Fixed now. Thanks.