Allow for NAs as empty values in technical replicate column

nunofonseca / irap

integrated RNA-seq Analysis Pipeline

GNU General Public License v3.0

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Closed pinin4fjords closed 6 years ago

pinin4fjords commented 6 years ago

This PR changes behaviour in the parsing of the technical replicate column in SDRF files to:

consider NA as empty
allow the whole column to be empty where technical replicates are absent (rather than populated with 'not applicable' or something)

An error is still returned where only a subset of entries are empty.