nunofonseca / irap

integrated RNA-seq Analysis Pipeline
GNU General Public License v3.0
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Fix to retain Number of reads #86

Closed pinin4fjords closed 5 years ago

pinin4fjords commented 6 years ago

This PR fixes an issue encountered when getting read numbers from the output of fastq_info.sh. For some reason, in the paired-end case the tail -n 5 did not include the read numbers line. The suggested fix here uses sed to explicitly request file content from 'Number of Reads' onwards.