nunofonseca / irap

integrated RNA-seq Analysis Pipeline
GNU General Public License v3.0
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Add explict -x for hisat index prefix #93

Closed pinin4fjords closed 5 years ago

pinin4fjords commented 6 years ago

This is part of the formal command syntax at https://ccb.jhu.edu/software/hisat2/manual.shtml. While the command runs without it for regular indices (.ht2) it doesn't work for large (.ht2l) indices.