Open GoogleCodeExporter opened 8 years ago
Currently 'bodily process' is a placeholder genus term whose only function is
to ensure that its child terms can be expressed using an Aristotelian
definition in line with the 2009 paper.
The 2010 paper definition of 'bodily process' has yet to be considered. I
personally think it is too expansive. It would permit things like catching a
butterfly to be 'bodily processes' just because arms participate in them (or
even "larger" processes such as "philosophical debates"). What we really want
for OGMS are those processes considered by systems biologists (immune system
processes, respiratory system processes, etc..)
A better approach that would capture what we need for OGMS would not just talk
about which entities participate, but where the process occurs (roughly we want
the process to occur in regions overlapping the extended organism...allowing
that things happening on the skin might be bodily processes in this sense). So
we need a mix of 'participates_in' and 'unfolds_in' for a formal definition.
My attempt:
bodily process =def a processual entity that has a part of an extended organism
as a participant and unfolds in a region that overlaps the extended organism.
bodily process = 'processual entity' AND has_participant SOME (part_of SOME
'extended organism') AND unfolds_in SOME (overlaps SOME 'extended organism
Using the def of 'unfolds in' from RO proposed:
"P unfolds_in C : the execution of P is spatially contained by C. forall pP,
forall c' partipates_in p, c' located_in C at t, for some t in P"
Original comment by albertgo...@gmail.com
on 25 Apr 2012 at 1:59
Don't use RO proposed. It has been superseded by
* http://purl.obolibrary.org/obo/bfo.owl
* http://purl.obolibrary.org/obo/ro.owl
Use occurs in:
http://purl.obolibrary.org/obo/BFO_0000066
Also - just use GO biological process, no need for bodily process
Original comment by cmung...@gmail.com
on 25 Apr 2012 at 6:46
Original issue reported on code.google.com by
mpjens@gmail.com
on 20 Apr 2012 at 7:38