Partial Product Names for Proteins Containing "/"

nvelden / geneviewer

An R package designed for drawing gene arrow maps

https://nvelden.github.io/geneviewer/

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Partial Product Names for Proteins Containing "/" #9

Closed ceaton1191 closed 2 months ago

ceaton1191 commented 2 months ago

the gbk_features_to_df() function returns protein names up to the "/" character for proteins with a / in their name. For example, I'm interested in the Candida auris gene CJJ07_001621, which is classified as a calcium/proton exchanger in my genbank file. However, if I create a CDS dataframe using this function and query it for the locus ID "CJJ07_001621", it returns the product "calcium" instead of "calcium/proton exchanger." This seems to mainly be a common problem for ion pumps.

nvelden commented 2 months ago

Could you give it another try? I just pushed a change that hopefully fixes this issue.

ceaton1191 commented 2 months ago

It's fixed! Thanks