Add support for s3 files

nvnieuwk / nft-bam

An nf-test plugin for reading the contents of SAM/BAM/CRAM files in assertions

https://nvnieuwk.github.io/nft-bam/

MIT License

6 stars 2 forks source link

Closed maxulysse closed 4 weeks ago

maxulysse commented 1 month ago

Trying to use a fasta file in s3 cause this error:

htsjdk.samtools.SAMException: Error opening file: s3:/ngi-igenomes/testdata/nf-core/modules/genomics/homo_sapiens/genome/genome.fasta