nvs-vocabs / P01

Repository to manage issues related to the BODC P01 Vocabulary
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P01 codes request - to replace unaccepted taxon names/incorrect biological entities [BODCNVS-2314] #263

Closed jakjonbodc closed 3 months ago

jakjonbodc commented 4 months ago

Request received to review/create P01 codes for 9 concepts.

5 proposed concepts with biological entities that replace unaccepted taxon names according to WoRMS. For example, the concept < Abundance of Heterorhabdus robustus (WoRMS 104581) [Stage: adult Sex: female] per unit volume of the water body >, code AHE09370<http://vocab.nerc.ac.uk/collection/P01/current/AHE09370/>, contains the biological entity 'Heterorhabdus robustus (WoRMS 104581)', which is now an unaccepted name replaced by 'Paraheterorhabdus robustus (WoRMS 368129)'. The proposed term is: < Abundance of Paraheterorhabdus robustus (WoRMS 368129) [Stage: adult Sex: female] per unit volume of the water body>.

4 proposed concepts containing biological entities that should replace an incorrect biological entity (taxon in a different phylum!). For example, The concept < Abundance of Metridiidae (WoRMS 100678) [Stage: copepodites C3] per unit volume of the water body>, code AME09389<http://vocab.nerc.ac.uk/collection/P01/current/AME09389/>, contains the biological entity 'Metridiidae (WoRMS 100678)', which is a sea anemone referring to the copepod developmental stage! It should have the biological entity 'Metridinidae (WoRMS 104092)'. The proposed term is: < Abundance of Metridinidae (WoRMS 104092) [Stage: copepodites C3] per unit volume of the water body>.

Proposed terms:

Abundance of Paraheterorhabdus robustus (WoRMS 368129) [stage: adult sex: female] per unit volume of the water body Abundance of Metridinidae (WoRMS 104092) [stage: copepodites C3] per unit volume of the water body Abundance of Metridinidae (WoRMS 104092) [stage: nauplii] per unit volume of the water body Abundance of Metridinidae (WoRMS 104092) [stage: copepodites C1] per unit volume of the water body Abundance of Metridinidae (WoRMS 104092) [stage: copepodites C2] per unit volume of the water body Abundance of Lampanyctus achirus (WoRMS 217707) [stage: not specified] per unit volume of the water body Abundance of Hansarsia megalops (WoRMS 1649789) [stage: not specified] per unit volume of the water body Abundance of Stomias boa (WoRMS 127374) [stage: not specified] per unit volume of the water body Abundance of Tectipleura (WoRMS 1057250) [stage: not specified] per unit volume of the water body

ahpanton commented 3 months ago

S25 corrections for 4 x Metridiidae terms completed - new taxon name Metridinidae, AphiaID 104092 P01s related to these terms updated - same P01 codes as before: AME09442 Abundance of Metridinidae (WoRMS 104092) [Stage: copepodites C2] per unit volume of the water body
AME09425 Abundance of Metridinidae (WoRMS 104092) [Stage: nauplii] per unit volume of the water body AME09408 Abundance of Metridinidae (WoRMS 104092) [Stage: copepodites C1] per unit volume of the water body
AME09389 Abundance of Metridinidae (WoRMS 104092) [Stage: copepodites C3] per unit volume of the water body

Five new S25s created: BE010390 Tectipleura (WoRMS 1057250) BE010389 Stomias boa (ITIS: 162292: WoRMS 127374) BE010388 Hansarsia megalops (WoRMS 1649789) BE010387 Paraheterorhabdus robustus (ITIS: 667263: WoRMS 368129) [Stage: adult Sex: female] BE010386 Lampanyctus achirus (ITIS: 182881: WoRMS 217707)

Five new P01s created for these new S25s: TEC10390 Abundance of Tectipleura (WoRMS 1057250) per unit volume of the water body
STO10389 Abundance of Stomias boa (ITIS: 162292: WoRMS 127374) per unit volume of the water body LAM10386 Abundance of Lampanyctus achirus (ITIS: 182881: WoRMS 217707) per unit volume of the water body HAN10388 Abundance of Hansarsia megalops (WoRMS 1649789) per unit volume of the water body
PAR10387 Abundance of Paraheterorhabdus robustus (ITIS: 667263: WoRMS 368129) [Stage: adult Sex: female] per unit volume of the water body

Description discussed with originator - 'Number of individuals from the specified biological entity identified, counted and normalised to a unit volume of water sample.'

Terms will be available online on the NVS from tomorrow morning

ahpanton commented 3 months ago

Links for the 5 new P01s now live:

TEC10390 Abundance of Tectipleura (WoRMS 1057250) per unit volume of the water body STO10389 Abundance of Stomias boa (ITIS: 162292: WoRMS 127374) per unit volume of the water body LAM10386 Abundance of Lampanyctus achirus (ITIS: 182881: WoRMS 217707) per unit volume of the water body HAN10388 Abundance of Hansarsia megalops (WoRMS 1649789) per unit volume of the water body PAR10387 Abundance of Paraheterorhabdus robustus (ITIS: 667263: WoRMS 368129) [Stage: adult Sex: female] per unit volume of the water body