Change the parallelization to be handled by `joblib`

nwlandry commented 10 months ago

I did the following in this PR:

I converted all the parallelization scripts (running and file collecting) to be handled by joblib (~10% faster than python multiprocessing)
Changed all the input arguments to enforce passing by reference.
I massively re-organized the repo, putting unused scripts in Extra, renaming the scripts to be more descriptive, having a single notebook for generating each figure, and organizing by figures.
I wrote a script to infer ZKC for different values of $t{max}$ to generate figure 1c, which is the posterior similarity vs. $t{max}$ for ZKC.
I added a script for generating heatmaps for the configuration model.

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nwlandry commented 10 months ago

Once I get new results and the parallelization scripts have been fixed, this will be ready for review.

nwlandry / complex-network-reconstruction