f-jx commented 3 years ago

linux version: 5.4.72-microsoft-standard-WSL2 conda version:4.10.3 R version:4.1.0

the error tips:

octet-stream' length 179789 bytes (175 KB)

downloaded 175 KB

installing source package ‘httpgd’ ... package ‘httpgd’ successfully unpacked and MD5 sums checked using staged installation ** libs x86_64-conda-linux-gnu-c++ -std=gnu++17 -I"/opt/miniconda3/lib/R/include" -DNDEBUG -Ilib -DBOOST_NO_AUTO_PTR -DFMT_HEADER_ONLY -I'/opt/miniconda3/lib/R/library/cpp11/include' -I'/opt/miniconda3/lib/R/library/BH/include' -I'/opt/miniconda3/lib/R/library/later/include' -I'/opt/miniconda3/lib/R/library/systemfonts/include' -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /opt/miniconda3/include -I/opt/miniconda3/include -Wl,-rpath-link,/opt/miniconda3/lib -fpic -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /opt/miniconda3/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/r-base-split_1621590585644/work=/usr/local/src/conda/r-base-4.1.0 -fdebug-prefix-map=/opt/miniconda3=/usr/local/src/conda-prefix -c AsyncLater.cpp -o AsyncLater.o In file included from /opt/miniconda3/x86_64-conda-linux-gnu/include/c++/9.3.0/chrono:41, from /opt/miniconda3/x86_64-conda-linux-gnu/include/c++/9.3.0/mutex:39, from AsyncLater.cpp:4: /opt/miniconda3/x86_64-conda-linux-gnu/include/c++/9.3.0/ctime:80:11: error: '::timespec_get' has not been declared 80 | using ::timespec_get; | ^~~~ make: *** [/opt/miniconda3/lib/R/etc/Makeconf:177：AsyncLater.o] error ERROR: compilation failed for package ‘httpgd’
removing ‘/opt/miniconda3/lib/R/library/httpgd’

The downloaded source packages are in ‘/tmp/RtmpPu9rzA/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning message: In install.packages("httpgd") : installation of package ‘httpgd’ had non-zero exit status

f-jx commented 3 years ago

Thanks, I final installed the httpgd successfully I reinstall R 4.0, and libpng-dev in my WSL, and it's OK.!

QiangShiPKU commented 2 years ago

Thanks, I final installed the httpgd successfully I reinstall R 4.0, and libpng-dev in my WSL, and it's OK.!

the same compilation error for R 4.0.5 and R 4.1.1., but not including R 4.0.0

nx10 commented 2 years ago

Thanks, I final installed the httpgd successfully I reinstall R 4.0, and libpng-dev in my WSL, and it's OK.!

the same compilation error for R 4.0.5 and R 4.1.1., but not including R 4.0.0

Could you please post the error log and system information?

QiangShiPKU commented 2 years ago

Thanks, I final installed the httpgd successfully I reinstall R 4.0, and libpng-dev in my WSL, and it's OK.!

the same compilation error for R 4.0.5 and R 4.1.1., but not including R 4.0.0

Could you please post the error log and system information?

OS: Ubuntu 18.04.2

installing source package ‘httpgd’ ... package ‘httpgd’ successfully unpacked and MD5 sums checked using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/raid1/shiq/app/miniconda3/envs/R/include/cairo -I/raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include/glib-2.0 -I/raid1/shiq/app/miniconda3/envs/R/lib/glib-2.0/include -I/raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include/pixman-1 -I/raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include/uuid -I/raid1/shiq/app/miniconda3/envs/R/include/libxml2 -I/raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include/libpng16 -I/raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include/freetype2 Using PKG_LIBS=-L/raid1/shiq/app/miniconda3/envs/R/lib -lcairo -lfreetype ** libs rm -f httpgd.so AsyncLater.o Base64.o DrawData.o Httpgd.o HttpgdApiAsync.o HttpgdDataStore.o HttpgdDev.o HttpgdWebServer.o PlotHistory.o RendererCairo.o RendererJson.o RendererManager.o RendererMeta.o RendererStrings.o RendererSvg.o RendererTikZ.o cpp11.o devGeneric.o x86_64-conda-linux-gnu-c++ -std=gnu++17 -I"/raid1/shiq/app/miniconda3/envs/R/lib/R/include" -DNDEBUG -I/raid1/shiq/app/miniconda3/envs/R/include/cairo -I/raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include/glib-2.0 -I/raid1/shiq/app/miniconda3/envs/R/lib/glib-2.0/include -I/raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include/pixman-1 -I/raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include/uuid -I/raid1/shiq/app/miniconda3/envs/R/include/libxml2 -I/raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include/libpng16 -I/raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include/freetype2 -Ilib -DBOOST_NO_AUTO_PTR -DFMT_HEADER_ONLY -I'/raid1/shiq/app/miniconda3/envs/R/lib/R/library/cpp11/include' -I'/raid1/shiq/app/miniconda3/envs/R/lib/R/library/BH/include' -I'/raid1/shiq/app/miniconda3/envs/R/lib/R/library/later/include' -I'/raid1/shiq/app/miniconda3/envs/R/lib/R/library/systemfonts/include' -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /raid1/shiq/app/miniconda3/envs/R/include -I/raid1/shiq/app/miniconda3/envs/R/include -Wl,-rpath-link,/raid1/shiq/app/miniconda3/envs/R/lib -fpic -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /raid1/shiq/app/miniconda3/envs/R/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/r-base-split_1630154298835/work=/usr/local/src/conda/r-base-4.1.1 -fdebug-prefix-map=/raid1/shiq/app/miniconda3/envs/R=/usr/local/src/conda-prefix -c AsyncLater.cpp -o AsyncLater.o In file included from /raid1/shiq/app/miniconda3/envs/R/x86_64-conda-linux-gnu/include/c++/9.3.0/chrono:41, from /raid1/shiq/app/miniconda3/envs/R/x86_64-conda-linux-gnu/include/c++/9.3.0/mutex:39, from AsyncLater.cpp:4: /raid1/shiq/app/miniconda3/envs/R/x86_64-conda-linux-gnu/include/c++/9.3.0/ctime:80:11: error: '::timespec_get' has not been declared 80 | using ::timespec_get; | ^~~~ make: *** [/raid1/shiq/app/miniconda3/envs/R/lib/R/etc/Makeconf:177: AsyncLater.o] Error 1 ERROR: compilation failed for package ‘httpgd’
removing ‘/raid1/shiq/app/miniconda3/envs/R/lib/R/library/httpgd’
restoring previous ‘/raid1/shiq/app/miniconda3/envs/R/lib/R/library/httpgd’

nx10 commented 2 years ago

I don't think this is a httpgd error but there is something wrong with the system (in your case anaconda) environment.

I found this thread which might help you.

conda upgrade -c conda-forge --all

Let me know if this works for you.

QiangShiPKU commented 2 years ago

I don't think this is a httpgd error but there is something wrong with the system (in your case anaconda) environment.

I found this thread which might help you.
conda upgrade -c conda-forge --all
Let me know if this works for you.

This does not work but reminds me. I have made it by the following steps: 1) In my conda environment, I found all packages are from conda-forge channel, except these four pairs

2) I created a new conda environment and installed R 4.1.1 and httpgd. According to this new environment, I updated packages above to v9.4.0 and installed httpgd in my original environment successfully

Thank you very much for your help!

nx10 / httpgd

compilation failed for package ‘httpgd’ #73

Selection: 25 try URL’https://mirrors.sustech.edu.cn/CRAN/src/contrib/httpgd_1.1.1.tar.gz' Content type 'application/octet-stream' length 179789 bytes (175 KB)