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nygenome / Conpair

Concordance and contamination estimator for tumor–normal pairs
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Python 3 compatibility #9

Closed supernifty closed 6 years ago

supernifty commented 6 years ago

I have updated the code so that it is also compatible with Python 3.

ewabergmann commented 6 years ago

Thanks for the commit supernifty!

stevekm commented 3 years ago

When I run it with Python 3, I get very different results. The same files used with scripts/verify_concordance.py gives me a score of 0.782 with Python 2.7, and a score of 0.936 with Python 3.7.4

ewabergmann commented 3 years ago

Hi Stephen, If you don't get a response here, I'd suggest contacting NYGC directly. Best to drop a message to Jennifer Shelton: jshelton@nygenome.org and CC Mike Zody: mzody@nygenome.org Apologies I cannot be more helpful as I'm not a part of NYGC anymore. Best wishes, Ewa

JenniferShelton commented 3 years ago

@stevekm can you provide any details about your input and commands?