gnarzisi
commented
5 years ago It seems like "clock_gettime()" is not available in macOS before Sierra. The link below provides a possible solution. Hope it helps.
https://stackoverflow.com/questions/5167269/clock-gettime-alternative-in-mac-os-x
proukakis
hi, still using OS El Capitan- I had problems before with 16 Gb RAM, having more helps
v_1.0.6 works fine, so not bothered- posting in case it helps others
i do make CC=gcc-6 CXX=g++-6
seems OK until here
Microassembler.cc: In member function 'int Microassembler::processReads()': Microassembler.cc:644:16: error: 'CLOCK_MONOTONIC' was not declared in this scope clock_gettime(CLOCK_MONOTONIC, &start); ^
~~~~~~ Microassembler.cc:644:39: error: 'clock_gettime' was not declared in this scope clock_gettime(CLOCK_MONOTONIC, &start); ^ In file included from Variant.hh:36:0, from Variant.cc:1: FET.hh: In member function 'double Variant_t::compute_FET_score()': FET.hh:71:22: warning: 'aux.FET_t::hgacct::n' may be used uninitialized in this function [-Wmaybe-uninitialized] if (n11%11 && n11 + aux->n - aux->n1 - aux->n_1) {~~^~FET.hh:95:11: note: 'aux.FET_t::hgacc_t::n' was declared here hgacc_t aux; ^~~ FET.hh:71:31: warning: 'aux.FET_t::hgacct::n1' may be used uninitialized in this function [-Wmaybe-uninitialized] if (n11%11 && n11 + aux->n - aux->n1_ - aux->n_1) {~~~^~~~ FET.hh:95:11: note: 'aux.FET_t::hgacct::n1' was declared here hgacc_t aux; ^~~ FET.hh:71:15: warning: 'aux.FET_t::hgacc_t::n1' may be used uninitialized in this function [-Wmaybe-uninitialized] if (n11%11 && n11 + aux->n - aux->n1 - aux->n_1) {~^~~~~~~~~~~ FET.hh:95:11: note: 'aux.FET_t::hgacc_t::n_1' was declared here hgacc_t aux; ^~~ FET.hh:72:25: warning: 'aux.FET_t::hgacc_t::n11' may be used uninitialized in this function [-Wmaybe-uninitialized] if (n11 == aux->n11 + 1) { // incremental~~~^FET.hh:95:11: note: 'aux.FET_t::hgacc_t::n11' was declared here hgacc_t aux; ^~~ FET.hh:74:68: warning: 'aux.FET_t::hgacc_t::p' may be used uninitialized in this function [-Wmaybe-uninitialized] (aux->n1 - aux->n11) / (n11 + aux->n - aux->n1 - aux->n_1); ^ FET.hh:95:11: note: 'aux.FET_t::hgacc_t::p' was declared here hgacc_t aux; ^~~ FET.hh: In member function 'double Variant_t::compute_SB_score()': FET.hh:71:22: warning: 'aux.FET_t::hgacct::n' may be used uninitialized in this function [-Wmaybe-uninitialized] if (n11%11 && n11 + aux->n - aux->n1 - aux->n_1) {~~^~FET.hh:95:11: note: 'aux.FET_t::hgacc_t::n' was declared here hgacc_t aux; ^~~ FET.hh:71:31: warning: 'aux.FET_t::hgacct::n1' may be used uninitialized in this function [-Wmaybe-uninitialized] if (n11%11 && n11 + aux->n - aux->n1_ - aux->n_1) {~~~^~~~ FET.hh:95:11: note: 'aux.FET_t::hgacct::n1' was declared here hgacc_t aux; ^~~ FET.hh:71:15: warning: 'aux.FET_t::hgacc_t::n1' may be used uninitialized in this function [-Wmaybe-uninitialized] if (n11%11 && n11 + aux->n - aux->n1 - aux->n_1) {~^~~~~~~~~~~ FET.hh:95:11: note: 'aux.FET_t::hgacc_t::n_1' was declared here hgacc_t aux; ^~~ FET.hh:72:25: warning: 'aux.FET_t::hgacc_t::n11' may be used uninitialized in this function [-Wmaybe-uninitialized] if (n11 == aux->n11 + 1) { // incremental~~~^FET.hh:95:11: note: 'aux.FET_t::hgacc_t::n11' was declared here hgacc_t aux; ^~~ FET.hh:74:68: warning: 'aux.FET_t::hgacc_t::p' may be used uninitialized in this function [-Wmaybe-uninitialized] (aux->n1 - aux->n11) / (n11 + aux->n - aux->n1 - aux->n_1); ^ FET.hh:95:11: note: 'aux.FET_t::hgacc_t::p' was declared here hgacc_t aux; ^~~ make[1]: *** [lancet] Error 1 cp: lancet: No such file or directory