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nygenome / lancet

Microassembly based somatic variant caller for NGS data
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Lancet use cases #57

Closed pdimens closed 1 year ago

pdimens commented 1 year ago

Is it possible to use Lancet for linked-read SNV calling on non-tumor samples?

gnarzisi commented 1 year ago

Lancet requires a matching (normal) sample. In the absence of that, you can try providing the same sample twice. This is not a recommended mode of usage, but all the variants should be called as "shared".

pdimens commented 1 year ago

Ah, thank you for the information.