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nyiuab / BhGLM

BhGLM (Bayesian hierarchical GLMs and survival models)
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TCGA analysis code #3

Open ddomingof opened 5 years ago

ddomingof commented 5 years ago

Hey guys, congratulations for your paper. I would like to rerun your analysis with a different pathway database. Could you please point me to the scripts to rerun the analysis? Thank you in advance,

Regards

Daniel

abbyyan3 commented 5 years ago

Hi Daniel,

Please find the R code for the paper: http://www.genetics.org/content/205/1/89.supplemental. Please let me know if you have any questions.

Thanks,

Xinyan

On Mon, Mar 18, 2019 at 5:37 PM Daniel Domingo-Fernández < notifications@github.com> wrote:

Hey guys, congratulations for your paper. I would like to rerun your analysis with a different pathway database. Could you please point me to the scripts to rerun the analysis? Thank you in advance,

Regards

Daniel

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ddomingof commented 5 years ago

Hi Xinyan,

I cant see any links to the data (TCGA and pathways) that I have to input into the script. Where can I find that?

Regards

Daniel