search

o-william-white / skim2mito

A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from genome skims
MIT License
7 stars 5 forks source link

Fastqc error #17

Closed o-william-white closed 5 months ago

o-william-white commented 7 months ago 
mv: cannot create regular file 'results/fastqc_qc/SSI13_South_Shetland_Islands_R2_fastqc.zip': File exists
Traceback (most recent call last):
  File "/gpfs/nhmfsa/bulk/share/data/mbl/share/workspaces/groups/clarkgroup/oliw/krill_arbor_shotgun_vs_exome_mt_and_rrna/skim2mt/.snakemake/scripts/tmp3uz3zwfu.wrapper.py", line 68, in <module>
    shell("mv {zip_path:q} {snakemake.output.zip:q}")
  File "/home/oliw/software/miniconda3/envs/snakemake/lib/python3.11/site-packages/snakemake/shell.py", line 297, in __new__
    raise sp.CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'set -euo pipefail;  mv /tmp/tmp_ifwrc9g/SSI13_South_Shetland_Islands_R2_fastqc.zip results/fastqc_qc/SSI13_South_Shetland_Islands_R2_fastqc.zip' returned non-zero exit status 1.