Better annotation of cox1 genes, using a custom bold or other database.

o-william-white / skim2mito

A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from genome skims

MIT License

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Better annotation of cox1 genes, using a custom bold or other database. #22

Open dickgroenenberg opened 4 months ago

dickgroenenberg commented 4 months ago

Annotation is now based on the contigs created by skim2mt, these often contain multiple genes (and might not even contain cox1). 'Better' identifications might be obtained by just blasting cox1 (or any of the markers separately for that matter).