README.md updates - add singularity install, put example command on single line

o-william-white / skim2mito

A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from genome skims

MIT License

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README.md updates - add singularity install, put example command on single line #24

Closed elichad closed 7 months ago

douglowe commented 7 months ago

@elichad - I've removed the need for singularity in this PR: https://github.com/o-william-white/skim2mt/pull/26

Could you review that PR - make sure it works for you?

Note that the blobtool step (for me using a snakemake docker container on apple silicon) currently looks to be having race dependency issues. So that step fails frequently, but when the workflow is resubmitted it seems to work fine. Could you let me know if you get that problem too?

douglowe commented 7 months ago

Can we add a note about conda channel priorities too? Along the lines of:

If building the environments fails because of channel priorities, then try changing your channel priority configuration:

conda config --show channel_priority flexible

o-william-white commented 7 months ago

Thank you :)