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o-william-white / skim2mito

A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from genome skims
MIT License
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Avoiding singularity container #25

Closed o-william-white closed 3 months ago

o-william-white commented 4 months ago

Hi @douglowe

Currently the pipeline uses a singularity image for the blobtools rule, which can be a problem for users on different systems.

Blobtool installation infor here https://blobtoolkit.genomehubs.org/install/

Docker image used by singulairty here https://blobtoolkit.genomehubs.org/install/use-docker/

douglowe commented 4 months ago

Resolved by https://github.com/o-william-white/skim2mt/pull/26