search

o-william-white / skim2mito

A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from genome skims
MIT License
9 stars 5 forks source link

renaming the top-level conda environment #28

Closed rvosa closed 5 months ago

rvosa commented 6 months ago

The top-level conda env in workflow/envs/conda_env.yaml is now referred to as 'snakemake', although it is a bit richer than just snakemake. To avoid name clashes in host systems, perhaps this can be renamed to skim2mt

o-william-white commented 6 months ago

This shouldn't be a problem... @bwprice has suggested renaming the tool to skim2mito? How do we feel about another name change?

bwprice commented 5 months ago

+1 million on a name change to skim2mito - much easier to say :)

rvosa commented 5 months ago

I don't care what it's called as long as it's reasonably unique. In the end, the conda environment is just going to be a folder on a computer and that folder can't be called 'snakemake' because there could easily be one by that name already there. 'skim2mito' is fine for that.

o-william-white commented 5 months ago

Name of tool and top level conda environment updated to skim2mito

bwprice commented 5 months ago

[heart] Ben Price reacted to your message:

From: Ollie White @.> Sent: Tuesday, June 25, 2024 1:26:54 PM To: o-william-white/skim2mito @.> Cc: Ben Price @.>; Mention @.> Subject: Re: [o-william-white/skim2mito] renaming the top-level conda environment (Issue #28)

Name of tool and top level conda environment updated to skim2mito

— Reply to this email directly, view it on GitHubhttps://github.com/o-william-white/skim2mito/issues/28#issuecomment-2188967422, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACG2URLLGA3TUJRRJ6FW37DZJFVZ5AVCNFSM6AAAAABHNC45RCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCOBYHE3DONBSGI. You are receiving this because you were mentioned.Message ID: @.***>