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o-william-white / skim2mito

A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from genome skims
MIT License
7 stars 5 forks source link

check #30

Closed DThuo closed 3 months ago

DThuo commented 4 months ago

getting this error: (snakemake) PS C:\Users\xxxxxx\skim2mt> snakemake --cores 2 --use-conda --config user_email=xxxx0@gmail.com IndentationError in file C:\Users\Njoroges\skim2mt\workflow\Snakefile, line 32: expected an indented block after 'if' statement on line 83 (Snakefile, line 32)

I have tried tweaking the source code, but still getting the error.

o-william-white commented 4 months ago

Hi @DThuo,

Thanks for highlighting this issue. I re-ran the test data on the main branch and I am unable to replicate the error. I wonder if this is due to different in snakemake versions? See https://github.com/snakemake/snakemake/issues/2765

I am using using snakemake verison 8.4.12. What version are you working with?

Cheers Ollie

o-william-white commented 3 months ago

Hi @DThuo, happy to work on this if you can give me more details on replicating the issue. Will close for now.

Cheers Ollie