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o-william-white / skim2mito

A snakemake pipeline for the batch assembly, annotation, and phylogenetic analysis of mitochondrial genomes from genome skims
MIT License
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Pecholleyn checkpoint/checkpoint fix #33

Closed o-william-white closed 5 months ago

o-william-white commented 5 months ago

Hi @pecholleyn,

Thanks for suggesting these changes. I tested with and without the go_batch step and it seems to work as expected. I also tidied up the summary output files to match the name format required for multiqc by default.

I am happy to merge and move on to the next issue, but happy for someone to test if preferred?

Cheers Ollie