NTR: terms from VEuPathDB Ontology of potential general interest

[cstoeckert]

In a review of VEuPathDB terms, we identified the following as ones that might fit in OBI. OK to add these? EUPATH:0010001 | antibiotic administration process EUPATH:0043192 | egg specimen collection process EUPATH:0043027 | larval specimen collection process EUPATH:0043060 | pupal specimen collection process EUPATH:0043054 | free-standing window trap EUPATH:0000528 | gametocyte detection assay EUPATH:0000545 | malaria rapid diagnosis test EUPATH:0000544 | organismal body temperature measurement assay EUPATH:0000538 | parasite detection assay EUPATH:0000724 | stool test for microorganisms EUPATH:0010098 | average respiratory rate EUPATH:0010078 | mean height EUPATH:0010087 | mean mid-upper arm circumference EUPATH:0021083 | blood specimen in vacutainer EUPATH:0000127 | blood specimen on filter paper EUPATH:0010079 | median height EUPATH:0010088 | median mid-upper arm circumference EUPATH:0011795 | blood test EUPATH:0000437 | falcivax rapid diagnostic test EUPATH:0000438 | optimal-IT rapid diagnostic test EUPATH:0011797 | urine test EUPATH:0010102 | water container EUPATH:0043115 | insecticide resistance datum EUPATH:0043194 | organism identification datum EUPATH:0000455 | proportion mapped reads EUPATH:0043003 | BG-lure scent dispenser EUPATH:0043048 | hand-held sweep net EUPATH:0043050 | Centers for Disease Control and Prevention gravid trap EUPATH:0010036 | information on eligibility criterion EUPATH:0000333 | easting coordinate measurement datum EUPATH:0000334 | northing coordinate measurement datum EUPATH:0000433 | parasite species identification by PCR assay EUPATH:0010047 | study center EUPATH:0000539 | parasite detection by PCR assay EUPATH:0000603 | sequencing protocol EUPATH:0000608 | specimen collection protocol EUPATH:0000606 | participant identifier EUPATH:0010095 | axillary temperature measurement datum EUPATH:0000110 | organismal body temperature measurement datum EUPATH:0000512 | common name of organism EUPATH:0000120 | age since birth at time of enrollment EUPATH:0000113 | age since birth at time of visit EUPATH:0000327 | entomological data item

plus (as part of obi-ontology/obi#1286): EUPATH:0000613 | specimen collection time post infection

[cstoeckert]

Suggested component to place new terms: assays: EUPATH:0000528 | gametocyte detection assay EUPATH:0000545 | malaria rapid diagnosis test EUPATH:0000544 | organismal body temperature measurement assay EUPATH:0000538 | parasite detection assay EUPATH:0000724 | stool test for microorganisms EUPATH:0011795 | blood test EUPATH:0000437 | falcivax rapid diagnostic test EUPATH:0000438 | optimal-IT rapid diagnostic test EUPATH:0011797 | urine test EUPATH:0000433 | parasite species identification by PCR assay EUPATH:0000539 | parasite detection by PCR assay

devices: EUPATH:0043054 | free-standing window trap EUPATH:0010102 | water container EUPATH:0043003 | BG-lure scent dispenser EUPATH:0043048 | hand-held sweep net EUPATH:0043050 | Centers for Disease Control and Prevention gravid trap

sample-collection EUPATH:0043192 | egg specimen collection process EUPATH:0043027 | larval specimen collection process EUPATH:0043060 | pupal specimen collection process

biobank-specimens EUPATH:0021083 | blood specimen in vacutainer EUPATH:0000127 | blood specimen on filter paper

sequence-analysis EUPATH:0000455 | proportion mapped reads

obi-dev EUPATH:0010001 | antibiotic administration process EUPATH:0010098 | average respiratory rate EUPATH:0010078 | mean height EUPATH:0010087 | mean mid-upper arm circumference EUPATH:0010079 | median height EUPATH:0010088 | median mid-upper arm circumference EUPATH:0043115 | insecticide resistance datum EUPATH:0043194 | organism identification datum EUPATH:0010036 | information on eligibility criterion EUPATH:0000333 | easting coordinate measurement datum EUPATH:0000334 | northing coordinate measurement datum EUPATH:0010047 | study center EUPATH:0000603 | sequencing protocol EUPATH:0000608 | specimen collection protocol EUPATH:0000606 | participant identifier EUPATH:0010095 | axillary temperature measurement datum EUPATH:0000110 | organismal body temperature measurement datum EUPATH:0000512 | common name of organism EUPATH:0000120 | age since birth at time of enrollment EUPATH:0000113 | age since birth at time of visit EUPATH:0000327 | entomological data item EUPATH:0000613 | specimen collection time post infection

[jamesaoverton]

Discussed on 2021-06-28: We checked two of the small PRs. It would be great to dedicate a call to the larger PRs.