Open obi-bot opened 9 years ago
Original comment by: zhengj2007
Following terms were added into OBI: DNA methylation profiling by ChIP-chip assay epigenetic modification assay transcription profiling by MPSS assay histone modification identification by ChIP-chip assay histone modification identification by ChIP-Seq assay transcription factor binding site identification by ChIP-chip assay transcription factor binding site identification by ChIP-Seq assay
Notes:
Due to the project deadline approaching, I added terms in for annotation. The terms need to be discussed.
Original comment by: zhengj2007
The definition of chip-seq assay incorrectly says that it achieves two planned objectives when it is the case that it could achieve one or the other (and possibly currently unforeseen objectives). It could be made correct (although fragile) by, instead of having axioms
achieves_planned_objective some A achieves_planned_objective some B
use achieves_planned_objective only (A or B)
Then have subclasses for the specific objectives (each of which should be a chip-seq assay rather than an assay which has a part which is chip-seq)
The reason the only (A or B) is fragile is because it isn't unlikely that there would be a new application of chip-seq. IMO better to leave it off and only have objectives in the subtypes.
Original comment by: alanruttenberg
The assertion of participation of sonicitor only on the Chip-exo subtype seems too specific. Shouldn't it be asserted on the parent chip-seq?
Original comment by: alanruttenberg
Original comment by: bpeters42
Following terms are request for supporting annotation of Beta Cell Genomics studies. DNA methylation profiling by ChIP-chip assay epigenetic modification assay transcription profiling by MPSS assay histone modification identification by ChIP-chip assay histone modification identification by ChIP-Seq assay transcription factor binding site identification assay transcription factor binding site identification by ChIP-chip assay transcription factor binding site identification by ChIP-Seq assay
The attached file contains detailed definitions of the request terms.
Reported by: zhengj2007
Original Ticket: obi/obi-terms/721