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The Ontology for Biomedical Investigations
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New Term Request - Illumina HiSeq 3000 #741

Closed obi-bot closed 7 years ago

obi-bot commented 9 years ago

editor preferred term: Illumina HiSeq 3000 alternative terms: HiSeq 3000 textual definition: A DNA sequencer manufactured by Illumina corporation with a single flow cell technology. definition source for the textual definition: http://www.illumina.com/systems/hiseq-3000-4000.html logical definition (or parent term): DNA Sequencer --> high throughput sequencer term editor: Sagar Jain, Richard Scheuermann

Reported by: sbjain

Original Ticket: obi/obi-terms/758

obi-bot commented 9 years ago

Original comment by: jamesaoverton

obi-bot commented 9 years ago

Discussed on the 2015-05-04 call.

We want to distinguish our terms using technical differences, not just marketing differences. We should update some of our exiting terms:

We decided that the number of flow cells and the daily throughput would be minimally sufficient to distinguish these machines. I found this information in the manufacturer's data sheets:

http://res.illumina.com/documents/products/datasheets/datasheet_hiseq_systems.pdf HiSeq 1000 up to 35 Gb per day HiSeq 2000 up to 55 Gb per day http://res.illumina.com/documents/products/datasheets/datasheet_hiseq2500.pdf HiSeq 2500 up to 160 Gb per day http://www.illumina.com/content/dam/illumina-marketing/documents/products/datasheets/hiseq-3000-4000-specification-sheet-770-2014-057.pdf HiSeq 3000 more than 200 Gb per day HiSeq 4000 more than 400 Gb per day

With one flow cell: 1000, 3000 With two flow cells: 2000, 2500, 4000

I will take responsibility for updating the definitions for existing terms and the two new HiSeq term requests. Sagar will add this information for his other term requests, where appropriate.

Original comment by: jamesaoverton

obi-bot commented 9 years ago

Term added as OBI_0002048. Closed by commit 3985.

Original comment by: jamesaoverton

obi-bot commented 9 years ago

Original comment by: jamesaoverton