obi-bot
commented
8 years ago discussed on Jan 11, 2016 call. Will add if clearly distinct from existing subtypes.
Original comment by: cstoeckert
Closed obi-bot closed 7 years ago
obi-bot
commented
8 years ago discussed on Jan 11, 2016 call. Will add if clearly distinct from existing subtypes.
Original comment by: cstoeckert
obi-bot
commented
8 years ago Original comment by: cstoeckert
obi-bot
commented
8 years ago David, I'm ready to add this to OBI but can you provide a definition source? Thanks for submitting this. Chris
Original comment by: cstoeckert
obi-bot
commented
8 years ago to follow up, can we use PMID: 26021296, Allum et al., Nature Commun. 2015?
Original comment by: cstoeckert
obi-bot
commented
8 years ago Hi Chris, yes, this is the right paper to use.
Thank you in advance,
David
On 01/23/2016 04:10 PM, Chris Stoeckert wrote:
to follow up, can we use PMID: 26021296, Allum et al., Nature Commun. 2015?
[obi-terms:#773] http://sourceforge.net/p/obi/obi-terms/773/ Adding a term for MCC-Seq
Status: open Group: general Created: Tue Jul 07, 2015 05:20 PM UTC by David Bujold Last Updated: Sat Jan 23, 2016 09:07 PM UTC Owner: Chris Stoeckert
Hello, I'd like to request a new ontology term for the MCC-Seq assay, with the following information:
Preferred label: "MethylC-Capture Sequencing" Alternative labels: "MCC-Seq", "Capture Methylome" Definition: "A next-generation sequencing approach in which a whole-genome sequencing library is prepared, bisulfite converted and amplified, followed by a capture enriching for targeted bisulfite-converted DNA fragments that are are subsequently identified by DNA sequencing". Example: MethylC-Capture Sequencing approach was introduced as a cost-effective and customizable alternative method for large-scale interrogation of functionally-active methylomes while simultaneously providing genetic variation information in a proof-of-concept epigenome-wide association study of 72 obese individuals, identifying novel disease-associated variants.
Thanks in advance!
David
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Original comment by: dbujold
obi-bot
commented
8 years ago Great! I'll add this term and close this item.
Original comment by: cstoeckert
obi-bot
commented
8 years ago Ok, thanks again!
David
On 01/25/2016 12:35 PM, Chris Stoeckert wrote:
Great! I'll add this term and close this item.
[obi-terms:#773] http://sourceforge.net/p/obi/obi-terms/773/ Adding a term for MCC-Seq
Status: open Group: general Created: Tue Jul 07, 2015 05:20 PM UTC by David Bujold Last Updated: Sat Jan 23, 2016 09:10 PM UTC Owner: Chris Stoeckert
Hello, I'd like to request a new ontology term for the MCC-Seq assay, with the following information:
Preferred label: "MethylC-Capture Sequencing" Alternative labels: "MCC-Seq", "Capture Methylome" Definition: "A next-generation sequencing approach in which a whole-genome sequencing library is prepared, bisulfite converted and amplified, followed by a capture enriching for targeted bisulfite-converted DNA fragments that are are subsequently identified by DNA sequencing". Example: MethylC-Capture Sequencing approach was introduced as a cost-effective and customizable alternative method for large-scale interrogation of functionally-active methylomes while simultaneously providing genetic variation information in a proof-of-concept epigenome-wide association study of 72 obese individuals, identifying novel disease-associated variants.
Thanks in advance!
David
Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/obi/obi-terms/773/
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Original comment by: dbujold
obi-bot
commented
8 years ago Original comment by: cstoeckert
obi-bot
commented
8 years ago Added to OBI.
Original comment by: cstoeckert
Hello, I'd like to request a new ontology term for the MCC-Seq assay, with the following information:
Preferred label: "MethylC-Capture Sequencing" Alternative labels: "MCC-Seq", "Capture Methylome" Definition: "A next-generation sequencing approach in which a whole-genome sequencing library is prepared, bisulfite converted and amplified, followed by a capture enriching for targeted bisulfite-converted DNA fragments that are are subsequently identified by DNA sequencing".
Example: MethylC-Capture Sequencing approach was introduced as a cost-effective and customizable alternative method for large-scale interrogation of functionally-active methylomes while simultaneously providing genetic variation information in a proof-of-concept epigenome-wide association study of 72 obese individuals, identifying novel disease-associated variants.
Thanks in advance!
David
Reported by: dbujold
Original Ticket: obi/obi-terms/773