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obiba / opal

OBiBa’s core database application for biobanks or epidemiological studies.
http://www.obiba.org/pages/products/opal/
GNU General Public License v3.0
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Lot of warnings about "Unable to locate current JTA transaction" #3536

Open tuxmaster5000 opened 5 years ago

tuxmaster5000 commented 5 years ago

Describe the bug In the opal log I see man warnings like this:

WARN org.obiba.opal.search.IndexSynchronizationManager - Error while checking indexable org.hibernate.HibernateException: Unable to locate current JTA transaction at org.hibernate.context.internal.JTASessionContext.currentSession(JTASessionContext.java:92) ~[hibernate-core-4.3.11.Final.jar:4.3.11.Final] at org.hibernate.internal.SessionFactoryImpl.getCurrentSession(SessionFactoryImpl.java:1014) ~[hibernate-core-4.3.11.Final.jar:4.3.11.Final] at org.obiba.magma.datasource.hibernate.HibernateValueTable.getValueTableState(HibernateValueTable.java:258) ~[magma-datasource-hibernate-2.0.1.jar:2.0.1] at org.obiba.magma.datasource.hibernate.HibernateValueTable.getTimestamps(HibernateValueTable.java:167) ~[magma-datasource-hibernate-2.0.1.jar:2.0.1] at org.obiba.magma.support.AbstractValueTableWrapper.getTimestamps(AbstractValueTableWrapper.java:123) ~[magma-api-2.0.1.jar:2.0.1] at org.obiba.magma.support.Timestampeds$1.compare(Timestampeds.java:28) ~[magma-api-2.0.1.jar:2.0.1] at org.obiba.magma.support.Timestampeds$1.compare(Timestampeds.java:20) ~[magma-api-2.0.1.jar:2.0.1] at org.obiba.es.opal.support.ESIndexManager$ESValueTableIndex.isUpToDate(ESIndexManager.java:335) ~[opal-search-es-1.0.0.jar:na] at org.obiba.opal.search.IndexSynchronizationManager$SyncProducer.run(IndexSynchronizationManager.java:129) ~[opal-search-2.15.1.jar:na] at org.apache.shiro.subject.support.SubjectRunnable.doRun(SubjectRunnable.java:120) [shiro-core-1.4.0.jar:1.4.0] at org.apache.shiro.subject.support.SubjectRunnable.run(SubjectRunnable.java:108) [shiro-core-1.4.0.jar:1.4.0] at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:395) [shiro-core-1.4.0.jar:1.4.0] at org.obiba.opal.search.IndexSynchronizationManager.synchronizeIndices(IndexSynchronizationManager.java:81) [opal-search-2.15.1.jar:na] at sun.reflect.GeneratedMethodAccessor112.invoke(Unknown Source) ~[na:na] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_222] at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_222] at org.springframework.scheduling.support.ScheduledMethodRunnable.run(ScheduledMethodRunnable.java:65) [spring-context-4.3.19.RELEASE.jar:4.3.19.RELEASE] at org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.java:54) [spring-context-4.3.19.RELEASE.jar:4.3.19.RELEASE] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_222] at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308) [na:1.8.0_222] at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:180) [na:1.8.0_222] at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:294) [na:1.8.0_222] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [na:1.8.0_222] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [na:1.8.0_222] at java.lang.Thread.run(Thread.java:748) [na:1.8.0_222]

But the system looks like working normal.

OS: CentOS 7.6 opal-server-2.15.1-1.noarch

stale[bot] commented 4 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.