Move `sources` and `launch` packages from `ddr` repository

[c71n93]

Related to #29

I started fixing dependencies from resolving sources and launch packages.

---

PR-Codex overview

This PR focuses on refactoring the GraphBuilder class and adding integration tests.

Detailed summary

• Refactored GraphBuilder class to match the version from the ddr repository
• Added integration tests for the entire program output format
• Added TempDirectoryTest class for testing the generation of temporary directories for modified xmir files

The following files were skipped due to too many changes: src/main/kotlin/org/objectionary/deog/launch/Workflow.kt, src/main/kotlin/org/objectionary/deog/sources/Sources.kt, src/main/kotlin/org/objectionary/deog/sources/XslTransformer.kt

✨ Ask PR-Codex anything about this PR by commenting with /codex {your question}

[c71n93]

@Graur could you check this, please?

[c71n93]

@Graur could you check this, please?

[c71n93]

@yegor256 could you take a look, please?

[yegor256]

@rultor merge

[rultor]

@rultor merge

@yegor256 OK, I'll try to merge now. You can check the progress of the merge here

[rultor]

@rultor merge

@c71n93 @yegor256 Oops, I failed. You can see the full log here (spent 3min)

    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
    at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:566)
    at org.apache.tools.ant.dispatch.DispatchUtils.execute (DispatchUtils.java:99)
    at org.apache.tools.ant.Task.perform (Task.java:350)
    at java.util.Vector.forEach (Vector.java:1394)
    at org.apache.tools.ant.taskdefs.Sequential.execute (Sequential.java:67)
    at net.sf.antcontrib.logic.IfTask.execute (IfTask.java:197)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
    at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:566)
    at org.apache.tools.ant.dispatch.DispatchUtils.execute (DispatchUtils.java:99)
    at org.apache.tools.ant.TaskAdapter.execute (TaskAdapter.java:155)
    at org.apache.tools.ant.UnknownElement.execute (UnknownElement.java:299)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
    at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:566)
    at org.apache.tools.ant.dispatch.DispatchUtils.execute (DispatchUtils.java:99)
    at org.apache.tools.ant.Task.perform (Task.java:350)
    at org.apache.tools.ant.Target.execute (Target.java:449)
    at org.apache.tools.ant.Target.performTasks (Target.java:470)
    at org.apache.tools.ant.Project.executeSortedTargets (Project.java:1401)
    at org.apache.tools.ant.Project.executeTarget (Project.java:1374)
    at org.apache.maven.plugins.antrun.AntRunMojo.execute (AntRunMojo.java:297)
    at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:126)
    at org.apache.maven.lifecycle.internal.MojoExecutor.doExecute2 (MojoExecutor.java:328)
    at org.apache.maven.lifecycle.internal.MojoExecutor.doExecute (MojoExecutor.java:316)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:212)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:174)
    at org.apache.maven.lifecycle.internal.MojoExecutor.access$000 (MojoExecutor.java:75)
    at org.apache.maven.lifecycle.internal.MojoExecutor$1.run (MojoExecutor.java:162)
    at org.apache.maven.plugin.DefaultMojosExecutionStrategy.execute (DefaultMojosExecutionStrategy.java:39)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:159)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:105)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:73)
    at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:53)
    at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:118)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:261)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:173)
    at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:101)
    at org.apache.maven.cli.MavenCli.execute (MavenCli.java:906)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:283)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:206)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
    at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:566)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:283)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:226)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:407)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:348)
[ERROR] 
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
\u001b[0m\u001b[0mcontainer b3ad578f898aac69f8f2c15b22d1277ed3e7e2c7d275133b2eb5680789ac6a0e is dead
Wed Oct 11 02:26:56 PM CEST 2023

[c71n93]

@Graur Could you check again, please. I fixed problem because of which rultor failed.

[Graur]

@c71n93 Just ask @yegor256 to run merge command once again

[c71n93]

@yegor256 could you merge it again, please?

[yegor256]

@rultor merge

[rultor]

@rultor merge

@yegor256 OK, I'll try to merge now. You can check the progress of the merge here

[rultor]

@rultor merge

@yegor256 Done! FYI, the full log is here (took me 3min)