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obophenotype / ABA_Uberon

Ontologized versions of the ABA structureGraphs - with mappings to Uberon
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turn off reasoner in makefile #8

Open shawntanzk opened 2 years ago

shawntanzk commented 2 years ago

turn off reasoner here https://github.com/obophenotype/ABA_Uberon/blob/6f53c60a7b8cd85ce5b659c2691ee74c84fee100/src/ontology/Makefile#L31 and make all and see if it is a good starting point

shawntanzk commented 2 years ago

Current error on: 

robot merge --input sources/allen-dhba.obo --input sources/allen-dmba.obo --input sources/allen-hba.obo --input sources/allen-mba.obo --input sources/allen-pba.obo --input sources/uberon-bridge-to-aba.obo --input sources/uberon-bridge-to-dhba.obo --input sources/uberon-bridge-to-dmba.obo --input sources/uberon-bridge-to-hba.obo --input sources/uberon-bridge-to-mba.obo --input sources/uberon-bridge-to-pba.obo annotate --ontology-iri $(URIBASE)/$@ -o $@

no target for sources files and no sources files loaded in - should probably have a make target to download it from uberon but add it to .gitignore

shawntanzk commented 2 years ago

see https://github.com/obophenotype/ABA_Uberon/pull/10 for fixes to get full run with reasoner off see https://github.com/obophenotype/ABA_Uberon/pull/11 for reports