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obophenotype / bds-pipeline-config

Brain data standards ontologies building pipeline configuration
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Configure prod #3

Open dosumis opened 3 years ago

dosumis commented 3 years ago

Leave this:

allow_entities_without_labels: true
index: false
testmode: false
batch: true
safe_label: loose
batch_size: 100000000
relation_type_threshold: 0.95
represent_values_and_annotations_as_json:
  iris:
    - "http://purl.obolibrary.org/obo/IAO_0000115"
    - "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
    - "http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"
    - "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"
    - "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"

Remove this and everything under it:

property_mapping:

Shawn to edit to remove existing content and add upper level groupings for cell types:

neo_node_labelling:

Shawn to edit to replace curie_map with one from BDS ontology repo.

curie_map:
hkir-dev commented 3 years ago

configuration updated But additional labels are causing problem #5 , may need a new CL release