EFO-OBA mapping (growth factor measurements)

[ar-ibrahim]

• will map terms from oba-efo-unreviewed.dosdp.tsv
• growth factor measurement terms

subject_id	subject_label	quality	quality_label	attribute	attribute_label
EFO:0008265	platelet-derived growth factor receptor beta measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020381	fibroblast growth factor 20 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020387	fibroblast growth factor 9 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0010782	fibroblast growth factor 19 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020360	epidermal growth factor receptor substrate 15-like 1 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008314	vascular endothelial growth factor receptor 2 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020379	fibroblast growth factor 17 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020475	insulin-like growth factor-binding protein 2 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0004818	transforming growth factor beta measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020391	fibroblast growth factor receptor 4 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020650	platelet-derived growth factor subunit b measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0004628	insulin like growth factor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0004762	vascular endothelial growth factor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020388	fibroblast growth factor receptor 1 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020382	fibroblast growth factor 4 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020847	vascular endothelial growth factor a, isoform 121 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020375	fibroblast growth factor 1 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0009181	growth differentiation factor 15 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020471	inhibitor of growth protein 1 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0010783	fibroblast growth factor 21 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008302	transforming growth factor-beta-induced protein ig-h3 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020476	insulin-like growth factor-binding protein 4 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008315	vascular endothelial growth factor receptor 3 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020477	insulin-like growth factor-binding protein 5 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008161	insulin-like growth factor-binding protein 7 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020384	fibroblast growth factor 7 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008152	hepatocyte growth factor activator measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020389	fibroblast growth factor receptor 2 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020648	platelet-derived growth factor c measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020780	transforming growth factor beta-1 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020383	fibroblast growth factor 6 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020848	vascular endothelial growth factor c measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020376	fibroblast growth factor 10 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0010924	proheparin-binding egf-like growth factor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0010784	fibroblast growth factor 5 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0010804	vascular endothelial growth factor a measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0010798	transforming growth factor-alpha measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008129	fibroblast growth factor 2 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0006903	hepatocyte growth factor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020478	insulin-like growth factor-binding protein 6 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008229	melanoma-derived growth regulatory protein measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020359	epidermal growth factor receptor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020781	transforming growth factor beta-2 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008153	hepatocyte growth factor receptor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020377	fibroblast growth factor 12 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020473	insulin-like growth factor 1 receptor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020179	bdnf/nt-3 growth factors receptor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0010799	transforming growth factor-beta measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020438	heparin-binding egf-like growth factor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0009381	fibroblast growth factor 23 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020284	connective tissue growth factor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020380	fibroblast growth factor 18 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008264	platelet-derived growth factor bb measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020386	fibroblast growth factor 8 isoform b measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008035	beta-nerve growth factor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008154	hepatocyte growth factor-like protein measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020378	fibroblast growth factor 16 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020782	transforming growth factor beta-3 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020474	insulin-like growth factor-binding protein 1 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008130	fibroblast growth factor basic measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0008297	teratocarcinoma-derived growth factor 1 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0006900	endothelial growth factor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020448	high affinity nerve growth factor receptor measurement	PATO:0002070	affinity	GO:0040007	growth
EFO:0020613	nt-3 growth factor receptor measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020779	transforming growth factor beta receptor type 3 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020390	fibroblast growth factor receptor 3 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020425	growth arrest-specific protein 1 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0020439	hepatoma-derived growth factor-related protein 2 measurement	PATO:0000001	quality	GO:0040007	growth
EFO:0009368	hepatocyte growth factor activator-like protein measurement	PATO:0000001	quality	GO:0040007	growth

[ar-ibrahim]

@rays22 Please review the mappings I added to efo_oba.sssom. I have a few comments on some of the terms which I summarized in the following table:

subject_id	subject_label	predicate_id	object_id	object_label
EFO:0004762	vascular endothelial growth factor measurement	skos:closeMatch	OBA:2050131	vascular endothelial growth factor A amount
EFO:0020847	vascular endothelial growth factor a, isoform 121 measurement	skos:broadMatch	OBA:2050131	vascular endothelial growth factor A amount
EFO:0010804	vascular endothelial growth factor a measurement	skos:exactMatch	OBA:2050131	vascular endothelial growth factor A amount
EFO:0006900	endothelial growth factor measurement	skos:closeMatch	OBA:2050131	vascular endothelial growth factor A amount
EFO:0008130	fibroblast growth factor basic measurement	skos:exactMatch	OBA:2050154	fibroblast growth factor 2 amount
EFO:0008129	fibroblast growth factor 2 measurement	skos:exactMatch	OBA:2050154	fibroblast growth factor 2 amount

• Four EFO terms (vascular endothelial growth factor measurement; vascular endothelial growth factor a, isoform 121 measurement; vascular endothelial growth factor a measurement; endothelial growth factor measurement) were mapped to the same OBA term 'vascular endothelial growth factor A amount'. There is no PRO term for vascular endothelial growth factor but vascular_ endothelial growth factor A is synonymous with vascular endothelial growth factor, which is also synonymous with endothelial growth factor.