the src/ontology/curation/protein-2023-05-19.txt contains all your proteins, and all the TSV files in that directory contain matches from different techniques.
@ar-ibrahim let me know if this helps, if it does not, and if you have ideas to improve it.
I build a little protein matching pipeline with OAK.
Check this https://github.com/obophenotype/bio-attribute-ontology/tree/master/src/ontology/curation
the src/ontology/curation/protein-2023-05-19.txt contains all your proteins, and all the TSV files in that directory contain matches from different techniques.
@ar-ibrahim let me know if this helps, if it does not, and if you have ideas to improve it.