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obophenotype / biological-spatial-ontology

An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces
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NR: cranial_to #7

Open cmungall opened 9 years ago

cmungall commented 9 years ago

Required for obophenotype/uberon#697

"cranial" has 2nd class status in bspo at the moment, it's a related syn to 'superior' (in the 'side' branch), which is defined relative to substrate

RDruzinsky commented 9 years ago

Problem is that cranial is not always a synonym of superior.

Robert E. Druzinsky, Ph.D. Clinical Associate Professor Dept. of Oral Biology College of Dentistry University of Illinois at Chicago 801 S. Paulina Chicago, IL 60612 druzinsk@uic.edu

Office: 312-996-0406 Lab: 312-996-0629 Website: www.peerj.com/RobertDruzinsky

On Thu, May 14, 2015 at 3:51 PM, Chris Mungall notifications@github.com wrote:

Required for obophenotype/uberon#697 https://github.com/obophenotype/uberon/issues/697

"cranial" has 2nd class status in bspo at the moment, it's a related syn to 'superior' (in the 'side' branch), which is defined relative to substrate

— Reply to this email directly or view it on GitHub https://github.com/obophenotype/biological-spatial-ontology/issues/7.

RDruzinsky commented 9 years ago

However, in the suprahypoid muscles, superior_to would work. Anterior_to is just wrong.

Robert E. Druzinsky, Ph.D. Clinical Associate Professor Dept. of Oral Biology College of Dentistry University of Illinois at Chicago 801 S. Paulina Chicago, IL 60612 druzinsk@uic.edu

Office: 312-996-0406 Lab: 312-996-0629 Website: www.peerj.com/RobertDruzinsky

On Thu, May 14, 2015 at 4:21 PM, Robert Druzinsky druzinsk@uic.edu wrote:

Problem is that cranial is not always a synonym of superior.

Robert E. Druzinsky, Ph.D. Clinical Associate Professor Dept. of Oral Biology College of Dentistry University of Illinois at Chicago 801 S. Paulina Chicago, IL 60612 druzinsk@uic.edu

Office: 312-996-0406 Lab: 312-996-0629 Website: www.peerj.com/RobertDruzinsky

On Thu, May 14, 2015 at 3:51 PM, Chris Mungall notifications@github.com wrote:

Required for obophenotype/uberon#697 https://github.com/obophenotype/uberon/issues/697

"cranial" has 2nd class status in bspo at the moment, it's a related syn to 'superior' (in the 'side' branch), which is defined relative to substrate

— Reply to this email directly or view it on GitHub https://github.com/obophenotype/biological-spatial-ontology/issues/7.

cmungall commented 9 years ago

Can you suggest a definition for 'superior to'? Defining this relative to a 'substrate' seems a bit problematic for many species.

ramonawalls commented 3 years ago

This is related to issue #4 and caudial-cranial axis.