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obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
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Pulmonary Submucosal Gland [NTR] #1059

Closed AnnekarinaPerl closed 3 years ago

AnnekarinaPerl commented 3 years ago

Note - please check that the term does not already exist (check OLS: https://www.ebi.ac.uk/ols/ontologies/cl)

Preferred term label: Pulmonary Submucosal Gland

Synonyms Pulmonary SMG

Definition (free text, please give PubMed ID in format PMID:XXXXXX) PMID: 26336032

Parent cell type term (check the hierarchy here https://www.ebi.ac.uk/ols/ontologies/cl): Submucosal gland UBERON:0011148

What is the anatomical structure that the cell is a part of? Please check Uberon: https://www.ebi.ac.uk/ols/ontologies/uberon SMGs are present within the connective tissues lining the cartelagious airways and are a major source of the protective mucus layer critical to normal innate defense. the gland contains the following cells: terminal ciliated duct basal cells Myoepithelial cells Mucous cells Serous Cells

Your nano-attribution (ORCID) https://orcid.org/0000-0002-8445-4565

Any additional notes or concerns @addiehl

AnnekarinaPerl commented 3 years ago

The SMG also contains the Ionocyte, goblet cells , cilliated cells, within the terminal ciliated duct.

addiehl commented 3 years ago

Hi Anna Karina,

This looks like a request that ought to be directed to Uberon rather than the Cell Ontology, as Uberon is an ontology for anatomical structures larger than cells. https://github.com/obophenotype/uberon/issues

-- Alex

addiehl commented 3 years ago

See http://purl.obolibrary.org/obo/UBERON_0011148 for a small hierarchy of submucosal glands already in Uberon.

AnnekarinaPerl commented 3 years ago

I agree thank you for pointing it out. I will stick with the cell terms

Anne-Karina Perl, PhD Associate Professor Cincinnati Children's Hospital Division of Pulmonary Biology 3333 Burnet Avenue, MLC 7029, Cincinnati, OH 45229 office: 513 636 6084 lab: 513 636 9799 fax: 513 803 4891 url: http://www.cincinnatichildrens.org/perl [tps://www.cincinnatichildrens.org/-/media/295b830c6eb94ee2b662c61a2945e5e6.ashx?h=67&w=200]https://www.cincinnatichildrens.org/

From: Alexander Diehl @.> Reply-To: obophenotype/cell-ontology @.> Date: Tuesday, April 27, 2021 at 12:34 PM To: obophenotype/cell-ontology @.> Cc: Anne Perl @.>, Author @.***> Subject: Re: [obophenotype/cell-ontology] Pulmonary Submucosal Gland [NTR] (#1059)

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Hi Anna Karina,

This looks like a request that ought to be directed to Uberon rather than the Cell Ontology, as Uberon is an ontology for anatomical structures larger than cells. https://github.com/obophenotype/uberon/issues

-- Alex

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