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obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
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[Class hierarchy] CL:1000433 and CL:1000435 epithelial cell of lacrimal canaliculus/duct #1392

Open paola-scibite opened 2 years ago

paola-scibite commented 2 years ago

CL term CL:1000433 and CL:1000435 epithelial cell of lacrimal canaliculus/duct

Suggested revision and reasons

CL:1000433 epithelial cell of lacrimal canaliculus Equivalent to epithelial cell and part of some lacrimal canaliculus;

CL:1000435 epithelial cell of lacrimal duct Equivalent to non-branched duct epithelial cell and part of some lacrimal drainage system;

UBERON:0001850 lacrimal drainage system has subclass lacrimal canaliculus and an editor note "TODO - resolve lacrimal canaliculus vs larcimal duct".

Improving the structure of the Uberon branch, including clarifying meaning and synonyms of terms, as well as adding definitions to CL 'branched duct epithelial cell' and 'non-branched duct epithelial cell', would address most questions here (is the equivalence axiom of CL:1000435 correct? Should CL:1000433 be equivalent to non-branched duct epithelial cell etc?). I opened https://github.com/obophenotype/uberon/issues/2225 re 'lacrimal drainage system'. Thanks.

paolaroncaglia commented 2 years ago

Dear CL and Uberon editors, No rush, but it'd be great if someone other than me could address this issue please, along with the related Uberon one. (This ticket was assigned to Nicole via the automated template; I'll leave it like that for now, but please feel free to contribute!) Note that UBERON:0001850 'lacrimal drainage system' is applicable (restricted) to Tetrapoda, so the related anatomical terms should accommodate some non-mammalian vertebrates too. Thanks.

github-actions[bot] commented 2 years ago

This issue has not seen any activity in the past 6 months; it will be closed automatically in one year from now if no action is taken.

paola-scibite commented 2 years ago

Dear CL + Uberon editors, Commenting to prevent staleness; this issue, and the related Uberon ticket, are still unresolved as far as I know. Thank you. Paola

nicolevasilevsky commented 2 years ago

I'll work on this @paola-scibite!

Revision: this is not as straightforward as I thought. I won't be able to work on this in a timely manner. @paola-scibite if you have the bandwidth, could you add the specific action items needed for this ticket and the Uberon ticket, and I'd be happy to implement them. Thanks!

paola-scibite commented 2 years ago

@nicolevasilevsky thanks for looking into this. Unfortunately, my knowledge of the topic is limited, and at present I don't have the bandwidth to explore this issue further. Could we please ask @RDruzinsky if he has any suggestions to address the questions in the first and second comment in this ticket? Many thanks in advance.

Best, Paola

github-actions[bot] commented 1 year ago

This issue has not seen any activity in the past 6 months; it will be closed automatically in one year from now if no action is taken.